Herring CA, Simmons RK, Freytag S, Poppe D, Moffet JJD, Pflueger J, Buckberry S, Vargas-Landin DB, Clément O, Echeverría EG, Sutton GJ, Alvarez-Franco A, Hou R, Pflueger C, McDonald K, Polo JM, Forrest ARR, Nowak AK, Voineagu I, Martelotto L, Lister R. Human prefrontal cortex gene regulatory dynamics from gestation to adulthood at single-cell resolution. Cell. 2022;185(23):10.1016/j.cell.2022.09.039
Freytag S, Lister R. schex avoids overplotting for large single-cell RNA-sequencing datasets. Bioinformatics. 2020;36(7):10.1093/bioinformatics/btz907
Freytag S, Tian L, Lönnstedt I, Ng M, Bahlo M. Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing data. F1000Research. 2018;7:10.12688/f1000research.15809.1
Freytag S, Burgess R, Oliver KL, Bahlo M. brain-coX: investigating and visualising gene co-expression in seven human brain transcriptomic datasets. Genome Medicine. 2017;9(1):10.1186/s13073-017-0444-y
Pandya T, Zagorulya M, Leung MM, Augustine M, Liu LY, Leppä A-M, Baruchel U, Ng SW, Klockner T, Mugabo M, Griffen AJ, Blyuss O, Iliakis CS, Grenov A, Haase K, Muller DC, Chan KH, Wu J, Burk VA, Wright N, Le Marois A, Pazukhina E, Ward S, Slawinski H, Pelletier M, Murphy C, Park MD, Snoeks T, Suarez-Bonnet A, Priestnall SL, Chardas A, Grieco C, Archer A, Celik A, Jimenez-Sanchez A, Scott R, Zahed H, Montégut L, Meza R, Durney CH, Lam S, Karasaki T, Vermeulen RCH, Xu H, Serrano-Fernandez P, Crnogorac-Jurcevic T, Menon U, Apostolidou S, Zaikin A, Gunu R, Whitwell HJ, Huang Z, Li Z, Hu X, Zhu B, Li L, Chirlaque M-D, Guevara M, Kolijn PM, Guenoun A, Mookherjee N, Johansson M, Wang Z, Chatterjee N, Chiu C-H, Chen Z, Pe’er D, Sahai E, Freytag S, Wack A, Gunter MJ, Merad M, Zhang J, Carlsten C, Yang P-C, Chen H-Y, Platz EA, LaFave LM, Smith-Byrne K, Jamal-Hanjani M, Litchfield K, Nene NR, McGranahan N, Grönroos E, Hill W, Weeden CE, Swanton C. Plasma signals of lung tumor promotion for molecular cancer prevention. Cell. 2026;189(13):10.1016/j.cell.2026.05.005
Kriel J, Moffet JJD, Lu T, Fatunla OE, Narayana VK, Valkovic A, Maluenda A, McConville MJ, Tsui E, Whittle JR, Best SA, Freytag S. An integrative spatial multi-omic workflow for unified analysis of tumor tissue. Cell Reports Methods. 2026;6(2):10.1016/j.crmeth.2026.101306
Moore Z, Storey C, Brown DV, Valkovic A, Spiteri M, Pignatelli JF, Oliver SJ, Fakhri A, Drummond KJ, Hart J, Harris L, Malinowski S, Ligon KL, Sieber OM, Whittle JR, Freytag S, Best SA. Patient-derived organoids and neurospheres recapitulate salient features of primary tumor heterogeneity. Neuro-Oncology Advances. 2026;8(1):10.1093/noajnl/vdaf247
Moore Z, Valkovic A, Pignatelli J, Fakhri A, Drummond KJ, Whittle JR, Freytag S, Best SA. P01.06.B THERAPEUTIC REPURPOSING REVEALS NOVEL INTERVENTIONS FOR HETEROGENEOUS GLIOBLASTOMA. Neuro-Oncology. 2025;27(Supplement_3):10.1093/neuonc/noaf193.086
Drummond KJ, Spiteri M, Cain SA, Jones J, Shaya S, Topp M, Lu T, Tobler R, Valkovic AL, Moore Z, Fatunla OE, Kriel J, Moffet JJD, McAlpine H, Rosier M, Guan H, Dimou J, Schadewaldt V, Roberts-Thomson S, McArdle D, Lui E, Voelker-Albert M, di Sanzo S, Nijagal B, Narayana VK, Mitchell CB, Vissers JHA, Grimmond S, Rosenthal MA, Palmer LM, Best SA, Freytag S, Whittle JR. Perioperative IDH inhibition in treatment-naive IDH-mutant glioma: a pilot trial. Nature Medicine. 2025;31(10):10.1038/s41591-025-03884-4
Stihl C, Dombrowski T, Weiss BG, Spiegel JL, Guertler A, Ihler F, Freytag S, Bertlich I, Gröger M, Oppel E, Bertlich M. Real life data with a six months follow-up from dietary interventions, biologic therapy and functional endoscopic surgery (FESS) in patients with chronic rhinosinusitis with nasal polyps (CRSwNP). Medicine. 2025;104(32):10.1097/md.0000000000043714
