NM Davidson, Y Chen, GL Ryland, P Blombery, J Goeke and A Oshlack, JAFFAL: Detecting fusion genes with long read transcriptome sequencing, Genome Biology 23 (1) 2022. PMID: 34991664
B Schmidt, LM Brown, GL Ryland, ALonsdale, HJ Kosasih, LE Ludlow, IJ Majewski, P Blombery, PG Ekert, NM Davidson and A Oshlack, ALLSorts: an RNA-Seq subtype classifier for B-cell acute lymphoblastic leukemia, Blood advances, 6 (14), 2022, PMID: 35482550
M Cmero, B Schmidt, IJ Majewski, PG Ekert, A Oshlack and NM Davidson, MINTIE: identifying novel structural and splice variants in transcriptomes using RNA-seq data, Genome biology 22 (1), 296, 2021, PMID: 34686194
M Cmero, NM Davidson and A Oshlack, Using equivalence class counts for fast and accurate testing of differential transcript usage, F1000Research 8, 2019, PMID: 31143443
NM Davidson and A Oshlack, Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis, GigaScience 7 (5), giy045, 2018, PMID: 29722876
NM Davidson, ADK Hawkins and A Oshlack, SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes, Genome biology 18 (1), 148, 2017, PMID: 28778180
NM Davidson, IJ Majewski and A Oshlack, JAFFA: High sensitivity transcriptome-focused fusion gene detection, Genome medicine 7 (1), 1, 2015, PMID: 26019724
NM Davidson and A Oshlack, Corset: enabling differential gene expression analysis for de novo assembled transcriptomes, Genome Biology 15 (7), 410, 2014, PMID: 25063469
IJ Majewski, L Mittempergher, NM Davidson , A Bosma, SM Willems , HM Horlings, Id Rink, L Greger, GJK Hooijer, D Peters, PM Nederlof , I Hofland , J de Jong , J Wesseling , RJC Kluin , W Brugman , R Kerkhoven, R Nieboer , P Roepman, A Broeks, TR Muley , J Jassem, J Niklinski , N van Zandwijk, A Brazma, A Oshlack, M van den Heuvel , R Bernards ,Identification of recurrent FGFR3 fusion genes in lung cancer through kinome‐centred RNA sequencing, The Journal of pathology 230 (3), 270-276, 2013, PMID: 23661334
KL Ayers, NM Davidson, D Demiyah, KN Roeszler, F Grützner, AH Sinclair, A Oshlack and CA Smith, RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome, Genome biology 14 (3), R26, 2013, PMID: 23531366