Selected publications

1. NM Davidson, Y Chen, GL Ryland, P Blombery, J Goeke and A Oshlack, JAFFAL: Detecting fusion genes with long read transcriptome sequencing, bioRxiv 2021
2. M Cmero, B Schmidt, IJ Majewski, PG Ekert, A Oshlack and NM Davidson, MINTIE: identifying novel structural and splice variants in transcriptomes using RNA-seq data, Genome biology 22 (1), 296, 2021, PMID: 34686194
3. M Cmero, NM Davidson and A Oshlack, Using equivalence class counts for fast and accurate testing of differential transcript usage, F1000Research 8, 2019, PMID: 31143443
4. BM Schmidt, NM Davidson, ADK Hawkins, R Bartolo, IJ Majewski, PG Ekert and A Oshlack, Clinker: visualizing fusion genes detected in RNA-seq data, GigaScience 7 (7), giy079, 2018, PMID: 29982439
5. NM Davidson and A Oshlack, Necklace: combining reference and assembled transcriptomes for more comprehensive RNA-Seq analysis, GigaScience 7 (5), giy045, 2018, PMID: 29722876
6. NM Davidson, ADK Hawkins and A Oshlack, SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes, Genome biology 18 (1), 148, 2017, PMID: 28778180
7. NM Davidson, IJ Majewski and A Oshlack, JAFFA: High sensitivity transcriptome-focused fusion gene detection, Genome medicine 7 (1), 1, 2015, PMID: 26019724
8. NM Davidson and A Oshlack, Corset: enabling differential gene expression analysis for de novo assembled transcriptomes, Genome Biology 15 (7), 410, 2014, PMID: 25063469
9.  IJ Majewski,  L Mittempergher, NM Davidson ,  A Bosma, SM Willems , HM Horlings, Id Rink,  L Greger,  GJK Hooijer,  D  Peters,  PM Nederlof , I Hofland ,  J de Jong , J Wesseling ,  RJC Kluin , W Brugman ,  R Kerkhoven,  R Nieboer ,   P Roepman,  A Broeks, TR Muley ,  J Jassem, J Niklinski ,  N van Zandwijk,  A Brazma,  A Oshlack, M van den Heuvel ,  R Bernards ,Identification of recurrent FGFR3 fusion genes in lung cancer through kinome‐centred RNA sequencing, The Journal of pathology 230 (3), 270-276, 2013, PMID: 23661334
10. KL Ayers, NM Davidson, D Demiyah, KN Roeszler, F Grützner, AH Sinclair, A Oshlack and CA Smith, RNA sequencing reveals sexually dimorphic gene expression before gonadal differentiation in chicken and allows comprehensive annotation of the W-chromosome, Genome biology 14 (3), R26, 2013, PMID: 23531366