record GenBank ID history name product exons length notes frameshift 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 pf1 1 pf1_1:29733w|pfa0005w pf1_1:29733w pfa0005w chr1_1.glm_6+7|24oct01 vbc pfemp1 var pfemp1 var 2 6492 29733 34985 36111 37349 pf1 2 pf1_1:39205c|pfa0010c pf1_1:39205c pfa0010c chr1_1.glm_8|24oct01 glm rifin rifin 2 996 39205 40146 40377 40430 pf1 3 pf1_1:42590c|pfa0015c pf1_1:42590c pfa0015c chr1_1.glm_9+10|24oct01 vbc var-like var-like 2 3984 42590 43840 43998 46730 pf1 4 pf1_1:50586w|pfa0020w pf1_1:50586w pfa0020w chr1_1.glm_11.1|24oct01 glm rifin rifin 2 1119 50586 50639 50795 51859 pf1 5 pf1_1:53432c|pfa0025c pf1_1:53432c pfa0025c chr1_1.glm_11.2|24oct01 vbc pseudogene partial stevor pseudogene partial stevor 1 72 front e x o n of a pseudogene stevor pseudogene breaks off inside i n t r o n 53432 53503 pf1 6 pf1_1:54001c|pfa0030c pf1_1:54001c pfa0030c chr1_1.glm_12|24oct01 glm stevor stevor 2 1080 glm_12 stevor = chr4_1.glm_19 stevor 54001 55011 55161 55229 pf1 7 pf1_1:56913c|pfa0035c pf1_1:56913c pfa0035c chr1_1.glm_13|24oct01 vbc rifin pseudogene rifin pseudogene 2 417 subtelomeric copy chr 1, 2, 3, 4, 7, 9a, 9b, 10, 11, 12, 13, 14 56913 57275 57503 57556 pf1 8 pf1_1:60005w|pfa0040w pf1_1:60005w pfa0040w chr1_1.glm_14|24oct01 vbc rifin rifin 2 1035 60005 60058 60256 61236 pf1 9 pf1_1:62420c|pfa0045c pf1_1:62420c pfa0045c chr1_1.glm_15.1|24oct01 vbc rifin rifin 2 1053 62420 63418 63580 63633 pf1 10 pf1_1:66050c|pfa0050c pf1_1:66050c pfa0050c chr1_p1020.glm_1 glm stevor stevor 2 1077 66050 67054 67151 67222 pf1 11 pf1_1:69537c|pfa0055c pf1_1:69537c pfa0055c chr1_2.glm_1=p10020.gen_2|24oct01 vbc stevor stevor 2 930 69537 70397 70582 70650 pf1 12 pf1_1:71857w|pfa0060w pf1_1:71857w pfa0060w chr1_2.glm_2=p10020.phat_3|24oct01 vbc stevor stevor 2 693 71857 71925 72036 72659 pf1 13 pf1_1:74796w|pfa0065w pf1_1:74796w pfa0065w chr1_2.glm_3|24oct01 vbc stevor stevor 2 708 74796 74864 74961 75599 pf1 14 pf1_1:76215c|pfa0070c pf1_1:76215c pfa0070c chr1_2.glm_4|24oct01 vbc pfb0980 pseudogene pfb0980 pseudogene 1 828 21 bases less than 15oct02 sequence 76215 77042 pf1 15 pf1_1:78689w|pfa0075w pf1_1:78689w pfa0075w chr1_2.glm_6|24oct01 vbc pseudogene var-c fragment pseudogene var-c fragment 1 1436 aligns with pf2:873767c pfb0975c pseudogene var-c fragment central region aligns with c10:60022w pf10_0011+0012w var-c pseudogene c10:6022w pf10_0011+0012w aligns with pfa0755w var-c pseudogene at front 78782w [T] | 79464 [A] | 79630 [T] | 79733 [-GA] 78689 80124 pf1 16 pf1_1:81998c|pfa0080c pf1_1:81998c pfa0080c chr1_2.glm_7|24oct01 glm rifin rifin 2 1110 81998 83053 83286 83339 pf1 17 pf1_1:84963c|pfa0085c pf1_1:84963c pfa0085c chr1_2.glm_8|24oct01 vbc pseudogene fragment var-c pfemp1 var e x o n 2 pseudogene fragment var-c pfemp1 var e x o n 2 1 1277 86233c [A] | 86022 [CA] | 85643 [A] | 85377 [AT] | 85351 [G] | 85032 [A] 84963 86239 pf1 18 pf1_1:87436c|pfa0090c pf1_1:87436c pfa0090c chr1_2.glm_9|24oct01 vbc stevor stevor 2 870 87436 88236 88342 88410 pf1 19 pf1_1:90475c|pfa0095c pf1_1:90475c pfa0095c chr1_2.glm_10|24oct01 glm rifin rifin 2 1017 90475 91437 91600 91653 pf1 20 pf1_1:93346c|pfa0100c pf1_1:93346c pfa0100c chr1_2.glm_11|24oct01 vbc pseudogene pseudogene 2 802 93952c [GA] | 93860 [AA] 93346 94073 94264 94337 pf1 21 pf1_1:95283w|pfa0105w pf1_1:95283w pfa0105w chr1_2.glm_12|24oct01 vbc stevor fragment pseudogene stevor fragment pseudogene 1 850 95376w [A] | 95455 [A] | 96017 [TT] 95283 96132 pf1 22 pf1_1:99052w|pfa0110w pf1_1:99052w pfa0110w chr1_2.glm_13+14|24oct01 vbc resa resa 2 3258 99052 99246 99453 102515 pf1 23 pf1_1:104936w|pfa0115w|03oct02 pf1_1:104936w pfa0115w|03oct02 sanger 2 354 104936 105007 105160 105441 pf1 24 pf1_1:107429c|pfa0120c pf1_1:107429c pfa0120c chr1_2.glm_15+16|24oct01 vbc 1 1152 taa @ 107989 107429 108580 pf1 25 pf1_1:110984c|pfa0125c pf1_1:110984c pfa0125c chr1_2.glm_17|24oct01 vbc 4 4704 110984 111057 111196 111284 111401 111479 111572 116033 pf1 26 pf1_1:119275c|pfa0130c pf1_1:119275c pfa0130c chr1_2.glm_18|24oct01 vbc 3 1893 119275 119355 119506 121215 121382 121483 pf1 27 pf1_1:124752w|pfa0135w pf1_1:124752w pfa0135w chr1_2.glm_19|24oct01 vbc stevor stevor 2 831 124752 124823 124961 125719 pf1 28 pf1_1:126553c|pfa0140c pf1_1:126553c pfa0140c chr1_2.glm_20|24oct01 glm 1 1823 frameshift near 127288 127289c [AT] 126553 128375 pf1 29 pf1_1:129194c|pfa0145c pf1_1:129194c pfa0145c chr1_2.glm_21|24oct01 glm 1 1881 129194 131074 pf1 30 pf1_1:132320c|pfa0150c pf1_1:132320c pfa0150c chr1_2.glm_22|24oct01 vbc 5 561 132320 132387 132515 132589 132706 132831 132927 133163 133251 133305 pf1 31 pf1_1:134587c|pfa0155c pf1_1:134587c pfa0155c chr1_2.glm_26w+27w+28w_ex1aof7|24oct01 vbc 1 4905 134587 139491 pf1 32 pf1_1:140896c|pfa0160c pf1_1:140896c pfa0160c chr1_2.glm_25w|24oct01 vbc 2 1305 140896 141320 141574 142453 pf1 33 pf1_1:143874c|pfa0165c pf1_1:143874c pfa0165c chr1_2.glm_24w|24oct01 vbc 1 2757 143874 146630 pf1 34 pf1_1:148149c|pfa0170c pf1_1:148149c pfa0170c chr1_2.glm_23w|24oct01 glm 1 4863 148149 153011 pf1 35 pf1_1:154410w|pfa0175w pf1_1:154410w pfa0175w chr1_2.glm_26+27+28_ex1b+2+3+4+5+6of7|24oct01 vbc 7 5454 154410 156754 156891 159200 159375 159468 159571 159665 159790 159879 159990 160170 160322 160660 pf1 36 pf1_1:161365w|pfa0180w|03oct02 pf1_1:161365w pfa0180w|03oct02 vbc 3 4606 frameshift near 161862 chr1_p0009.glm4+5|04may2001 no frameshift 4 a's less addition of 3 bases from 24oct02 161863w [A] 161365 165517 165788 166043 166268 166464 pf1 37 pf1_1:166748w|pfa0185w|03oct02 pf1_1:166748w pfa0185w|03oct02 vbc 6 1608 loss of 3 bases from 24oct01 166748 167792 167893 168161 168325 168441 168540 168597 168724 168780 168861 168922 pf1 38 pf1_1:169314c|pfa0190c pf1_1:169314c pfa0190c chr1_2.glm_33|24oct01 vbc 10 1143 169314 169361 169451 169552 169635 169690 169833 169937 170056 170125 170277 170518 170640 170841 170968 171090 171191 171263 171387 171508 pf1 39 pf1_1:173099w|pfa0195w pf1_1:173099w pfa0195w chr1_2.glm_34|24oct01 glm 1 1728 173099 174826 pf1 40 pf1_1:175844w|pfa0200w|03oct02 pf1_1:175844w pfa0200w|03oct02 sanger 3 492 175844 175901 176069 176123 176233 176611 pf1 41 pf1_1:178322w|pfa0205w pf1_1:178322w pfa0205w chr1_2.glm_35|24oct01 glm 2 2376 178322 179096 179425 181025 pf1 42 pf1_1:183057c|pfa0210c pf1_1:183057c pfa0210c chr1_2.glm_36|24oct01 glm 1 1401 183057 184457 pf1 43 pf1_1:190507w|pfa0215w+pfa0220w|03oct02 pf1_1:190507w pfa0215w+pfa0220w|03oct02 chr1_2.glm_37+38+39+40|24oct01 vbc 3 10500 190507 197554 197788 200899 201129 201468 pf1 44 pf1_1:202774w|pfa0225w pf1_1:202774w pfa0225w chr1_2.glm_41|24oct01 glm 1 1608 202774 204381 pf1 45 pf1_1:204860c|pfa0230c pf1_1:204860c pfa0230c chr1_2.glm_42|24oct01 glm 1 834 204860 205693 pf1 46 pf1_1:206408w|pfa0235w pf1_1:206408w pfa0235w chr1_2.glm_43|24oct01 vbc 1 4020 206408 210427 pf1 47 pf1_1:211108w|pfa0240w pf1_1:211108w pfa0240w chr1_2.glm_44|24oct01 vbc 1 2136 211108 213243 pf1 48 pf1_1:216014w|pfa0245w pf1_1:216014w pfa0245w chr1_2.glm_46|24oct01 vbc 1 1734 216014 217747 pf1 49 pf1_1:221440w|pfa0250w pf1_1:221440w pfa0250w chr1_2.glm_47|24oct01 glm 1 432 221440 221871 pf1 50 pf1_1:222492c|pfa0255c pf1_1:222492c pfa0255c chr1_2.glm_48|24oct01 glm 1 1707 222492 224198 pf1 51 pf1_1:225348c|pfa0260c|03oct02 pf1_1:225348c pfa0260c|03oct02 sanger 2 489 225348 225820 226002 226017 pf1 52 pf1_1:226919c|pfa0265c pf1_1:226919c pfa0265c chr1_2.glm_49|24oct01 glm 2 423 226919 227130 227313 227523 pf1 53 pf1_1:228724c|pfa0270c pf1_1:228724c pfa0270c chr1_2.glm_50|24oct01 glm 1 1035 228724 229758 pf1 54 pf1_1:230528c|pfa0275c pf1_1:230528c pfa0275c chr1_2.glm_51|24oct01 sanger 3 3675 230528 231621 231870 234307 234499 234641 pf1 55 pf1_1:238878w|pfa0280w pf1_1:238878w pfa0280w chr1_2.glm_52|24oct01 glm 1 9219 238878 248096 pf1 56 pf1_1:249470c|pfa0285c pf1_1:249470c pfa0285c chr1_2.glm_53+54|24oct01 vbc 2 2499 249470 250605 250887 252249 pf1 57 pf1_1:253823w|pfa0290w pf1_1:253823w pfa0290w chr1_2.glm_55|24oct01 glm 1 1347 253823 255169 pf1 58 pf1_1:256014c|pfa0295c pf1_1:256014c pfa0295c chr1_2.glm_56+57|24oct01 vbc 2 2835 256014 258827 259124 259144 pf1 59 pf1_1:260897c|pfa0300c pf1_1:260897c pfa0300c chr1_2.glm_58|24oct01 glm 1 1152 260897 262048 pf1 60 pf1_1:263579c|pfa0305c pf1_1:263579c pfa0305c chr1_2.glm_59|24oct01 vbc 2 648 263579 264098 264335 264462 pf1 61 pf1_1:265447c|pfa0310c pf1_1:265447c pfa0310c chr1_2.glm_60|24oct01 vbc 3 3687 265447 265776 265913 266211 266355 269412 pf1 62 pf1_1:272693w|pfa0315w pf1_1:272693w pfa0315w chr1_2.glm_61|24oct01 vbc 4 471 272693 272754 272904 273001 273096 273181 273417 273641 pf1 63 pf1_1:274530w|pfa0320w pf1_1:274530w pfa0320w chr1_2.glm_63.1|24oct01 vbc 1 4236 274530 278765 pf1 64 pf1_1:279330w|pfa0325w pf1_1:279330w pfa0325w chr1_2.glm_63.2|24oct01 vbc 1 900 279330 280229 pf1 65 pf1_1:281370w|pfa0330w pf1_1:281370w pfa0330w chr1_2.glm_64|24oct01 glm 1 4305 281370 285674 pf1 66 pf1_1:287167w|pfa0335w|03oct02 pf1_1:287167w pfa0335w|03oct02 sanger 9 645 287167 287266 287485 287568 287777 287846 287995 288033 288188 288300 288430 288482 288738 288831 288928 288980 289096 289134 pf1 67 pf1_1:290602w|pfa0340w pf1_1:290602w pfa0340w chr1_2.glm_65|24oct01 vbc 1 2205 290602 292806 pf1 68 pf1_1:293860w|pfa0345w pf1_1:293860w pfa0345w chr1_2.glm_66|24oct01 vbc 6 507 293860 293983 294178 294245 294468 294554 294651 294731 294928 294987 295100 295186 pf1 69 pf1_1:295518c|pfa0350c pf1_1:295518c pfa0350c mal1p1.63 chr1_2.glm_67|24oct01 glm 1 1632 295518 297149 pf1 70 pf1_1:297429w|pfa0355w pf1_1:297429w pfa0355w mal1p1.64|03oct02 vbc 11 1062 nc_004325 feature table gene identification error 297429 297470 297574 297753 297858 297982 298113 298206 298328 298402 298515 298694 298770 298816 298908 298953 299064 299141 299277 299395 299536 299611 pf1 71 pf1_1:299776c|pfa0360c pf1_1:299776c pfa0360c chr1_2.glm_69|24oct01 vbc 2 1200 299776 300306 300414 301082 pf1 72 pf1_1:301627c|pfa0365c pf1_1:301627c pfa0365c chr1_2.glm_70|24oct01 glm 1 396 301627 302022 pf1 73 pf1_1:304091w|pfa0370w pf1_1:304091w pfa0370w chr1_2.glm_71|24oct01 glm 1 462 304091 304552 pf1 74 pf1_1:305516c|pfa0375c pf1_1:305516c pfa0375c chr1_2.glm_73|24oct01 glm 4 4413 305516 305590 305758 305887 306030 306102 306277 310411 pf1 75 pf1_1:315774w|pfa0380w pf1_1:315774w pfa0380w chr1_2.glm_74|24oct01 sanger 2 4605 315774 318856 319038 320559 pf1 76 pf1_1:321396w|pfa0385w pf1_1:321396w pfa0385w chr1_2.glm_75|03oct02 sanger/vbc /vbc 3 993 321396 321420 321609 322523 322706 322758 pf1 77 pf1_1:323526w|pfa0390w pf1_1:323526w pfa0390w chr1_2.glm_76|24oct01 vbc 1 3701 frameshift near 325366 325365w [GA] 323526 327226 pf1 78 pf1_1:327551c|pfa0395c pf1_1:327551c pfa0395c chr1_2.glm_77|24oct01 glm 1 657 327551 328207 pf1 79 pf1_1:329584c|pfa0400c pf1_1:329584c pfa0400c chr1_2.glm_78|24oct01 vbc 4 657 329584 329632 329762 329856 329987 330496 330709 330711 pf1 80 pf1_1:331891w|pfa0405w pf1_1:331891w pfa0405w chr1_2.glm_79|24oct01 vbc 1 1971 331891 333861 pf1 81 pf1_1:338321w|pfa0410w pf1_1:338321w pfa0410w chr1_2.glm_80|24oct01 glm 1 6666 338321 344986 pf1 82 pf1_1:345553c|pfa0415c pf1_1:345553c pfa0415c chr1_2.glm_81+82|24oct01 vbc 9 993 345553 345708 345829 345883 346026 346150 346295 346366 346471 346554 346656 346723 346838 347004 347168 347420 347681 347693 pf1 83 pf1_1:350323w|pfa0420w pf1_1:350323w pfa0420w chr1_2.glm_83|24oct01 glm 1 540 350323 350862 pf1 84 pf1_1:351148c|pfa0425c pf1_1:351148c pfa0425c chr1_2.glm_84|24oct01 vbc 6 921 351148 351252 351452 351526 351698 351830 351942 352107 352187 352379 352531 352779 pf1 85 pf1_1:353467c|pfa0430c pf1_1:353467c pfa0430c chr1_2.glm_85+86|03oct02 sanger 4 3459 353467 353509 353612 353693 353836 353968 354164 357364 pf1 86 pf1_1:358987w|pfa0435w pf1_1:358987w pfa0435w chr1_2.glm_87|24oct01 vbc 11 1083 358987 359002 359199 359266 359372 359503 359658 359728 359856 359911 360048 360353 360537 360716 360898 360968 361072 361125 361272 361325 361418 361492 pf1 87 pf1_1:364471w|pfa0440w pf1_1:364471w pfa0440w chr1_2.glm_89|24oct01 glm 1 675 364471 365145 pf1 88 pf1_1:366763w|pfa0445w pf1_1:366763w pfa0445w chr1_2.glm_91+92|24oct01 vbc 2 3090 366763 366976 367073 369948 pf1 89 pf1_1:370633c|pfa0450c pf1_1:370633c pfa0450c chr1_2.glm_93|24oct01 glm 1 699 370633 371331 pf1 90 pf1_1:372968c|pfa0455c pf1_1:372968c pfa0455c chr1_2.glm_94|24oct01 vbc 2 969 372968 373799 374029 374165 pf1 91 pf1_1:375592c|pfa0460c pf1_1:375592c pfa0460c chr1_2.glm_95|24oct01 glm 2 501 375592 375963 376112 376240 pf1 92 pf1_1:377447c|pfa0465c pf1_1:377447c pfa0465c chr1_2.glm_96|24oct01 vbc 2 468 377447 377739 377983 378157 pf1 93 pf1_1:379027c|pfa0470c pf1_1:379027c pfa0470c chr1_2.glm_97|24oct01 vbc 3 453 379027 379286 379418 379471 379614 379752 pf1 94 pf1_1:380090c|pfa0475c|03oct02 pf1_1:380090c pfa0475c|03oct02 vbc 3 522 380090 380137 380381 380706 380813 380960 pf1 95 pf1_1:381851w|pfa0480w pf1_1:381851w pfa0480w chr1_2.glm_99|24oct01 vbc 1 1728 381851 383578 pf1 96 pf1_1:384396w|pfa0485w pf1_1:384396w pfa0485w chr1_2.glm_100+101+102+103|24oct01 vbc 19 2433 384396 384876 385041 385166 385316 385424 385554 385692 385781 385961 386051 386253 386418 386539 386615 386674 386777 386921 387059 387125 387243 387322 387485 387547 387712 387772 387845 387876 388025 388196 388368 388528 388589 388616 388750 388885 389028 389094 pf1 97 pf1_1:389526w|pfa0490w pf1_1:389526w pfa0490w chr1_p205867.glm_32|24oct01 vbc 1 705 389526 390230 pf1 98 pf1_1:390415c|pfa0495c pf1_1:390415c pfa0495c chr1_2.glm_104|24oct01 glm 1 2805 390415 393219 pf1 99 pf1_1:393758w|pfa0500w pf1_1:393758w pfa0500w chr1_2.glm_105|24oct01 glm 1 432 393758 394189 pf1 100 pf1_1:395029c|pfa0505c pf1_1:395029c pfa0505c chr1_2.glm_106|24oct01 glm 2 750 395029 395611 395823 395989 pf1 101 pf1_1:397745w|pfa0510w pf1_1:397745w pfa0510w chr1_2.glm_107|24oct01 glm 2 6858 397745 404509 404668 404760 pf1 102 pf1_1:406893w|pfa0515w pf1_1:406893w pfa0515w chr1_2.glm_108|24oct01 sanger 7 5133 406893 411287 411474 411606 411707 412104 412455 412534 412676 412714 413037 413086 413286 413323 pf1 103 pf1_1:414914c|pfa0520c pf1_1:414914c pfa0520c chr1_2.glm_109|24oct01 glm 1 1341 414914 416254 pf1 104 pf1_1:419075w|pfa0525w pf1_1:419075w pfa0525w chr1_2.glm_110+111|24oct01 sanger 3 1104 419075 419147 419534 419991 420189 420761 pf1 105 pf1_1:421447c|pfa0530c pf1_1:421447c pfa0530c chr1_2.glm_112|24oct01 sanger 1 561 421447 422007 pf1 106 pf1_1:422930c|pfa0535c pf1_1:422930c pfa0535c chr1_2.glm_113+114+115|03oct02 sanger 6 5010 422930 423037 423282 423437 423513 423650 423886 423945 424004 424066 424245 428729 pf1 107 pf1_1:431305c|pfa0540c|03oct02 pf1_1:431305c pfa0540c|03oct02 sanger 3 294 431305 431383 431673 431776 431901 432011 pf1 108 pf1_1:432691c|pfa0545c pf1_1:432691c pfa0545c chr1_2.glm_115|24oct01 glm 1 3504 432691 436194 pf1 109 pf1_1:437560w|pfa0550w pf1_1:437560w pfa0550w chr1_2.glm_116|24oct01 vbc 1 2157 437560 439716 pf1 110 pf1_1:440804c|pfa0555c pf1_1:440804c pfa0555c chr1_2.glm_117|24oct01 vbc 6 1080 440804 440976 441102 441545 441707 441796 441916 442003 442250 442524 442851 442860 pf1 111 pf1_1:443695c|pfa0560c|03oct02 pf1_1:443695c pfa0560c|03oct02 sanger 1 747 443695 444441 pf1 112 pf1_1:444737c|pfa0565c pf1_1:444737c pfa0565c chr1_2.glm_118|24oct01 glm 1 354 444737 445090 pf1 113 pf1_1:447177w|pfa0570w pf1_1:447177w pfa0570w chr1_2.glm_119|24oct01 sanger 8 1914 447177 447926 448043 448195 448490 448573 448768 448898 448992 449013 449178 449340 449542 449970 450252 450433 pf1 114 pf1_1:451193c|pfa0575c|03oct02 pf1_1:451193c pfa0575c|03oct02 sanger 3 246 451193 451249 451447 451578 451740 451796 pf1 115 pf1_1:452384c|pfa0580c pf1_1:452384c pfa0580c chr1_2.glm_120|24oct01 sanger 4 1305 452384 452453 452744 453590 453740 453840 453982 454268 pf1 116 pf1_1:455997w|pfa0585w pf1_1:455997w pfa0585w chr1_2.glm_121|24oct01 glm 1 492 455997 456488 pf1 117 pf1_1:465876w|pfa0590w pf1_1:465876w pfa0590w chr1_2.glm_123|24oct01 glm 1 5469 465876 471344 pf1 118 pf1_1:474888w|olim pf1_1:474888w olim pfa0595w 18s_r-rna tigr 1 2149 cf pseudoknot loop cum e.coli 474888 477036 pf1 119 pf1_1:477431w|olim pf1_1:477431w olim pfa0600w 5.8s_r-rna tigr 1 121 477431 477551 pf1 120 pf1_1:478428w|olim pf1_1:478428w olim pfa0605w tigr 28s_r-rna 28s_r-rna 1 4104 chr1, 5, 7, 8, 11, 13 cf alignment chr5:1292417 478428 482531 pf1 121 pf1_1:482958c|pfa0610c pf1_1:482958c pfa0610c chr1_2.glm_125|24oct01 vbc 2 612 482958 483468 483667 483767 pf1 122 pf1_1:487661w|pfa0615w pf1_1:487661w pfa0615w chr1_2.glm_126|24oct01 vbc 2 555 487661 487735 487856 488335 pf1 123 pf1_1:489041c|pfa0620c pf1_1:489041c pfa0620c chr1_2.glm_127|24oct01 glm 2 2022 489041 490987 491202 491276 pf1 124 pf1_1:496393w|pfa0625w pf1_1:496393w pfa0625w chr1_2.glm_129|24oct01 glm 2 4668 496393 497388 497554 501225 pf1 125 pf1_1:502108c|pfa0630c pf1_1:502108c pfa0630c chr1_2.glm_130|24oct01 glm 2 1779 502108 503658 503790 504017 pf1 126 pf1_1:506087c|pfa0635c pf1_1:506087c pfa0635c chr1_2.glm_131|24oct01 glm 2 1755 506087 507730 507913 508023 pf1 127 pf1_1:509401c|pfa0640c pf1_1:509401c pfa0640c chr1_2.glm_132|24oct01 glm 2 1296 509401 510489 510691 510897 pf1 128 pf1_1:513235w|pfa0650w+pfa0655w pf1_1:513235w pfa0650w+pfa0655w chr1_2.glm_134+135+136|03oct02 sanger/vbc pseudogene /vbc pseudogene 2 5683 frameshift near 517704 read through tga @ 516184, tag @ 518492 517705w [A] 513235 515865 515953 519004 pf1 129 pf1_1:522529w|pfa0660w pf1_1:522529w pfa0660w chr1_2.glm_137|24oct01 vbc 4 1209 522529 522639 522868 522999 523118 523517 523736 524301 pf1 130 pf1_1:528829w|pfa0665w pf1_1:528829w pfa0665w chr1_2.glm_138+139|24oct01 sanger 4 8703 528829 531787 531897 533215 533374 536181 536457 538073 pf1 131 pf1_1:538831c|pfa0670c pf1_1:538831c pfa0670c chr1_2.glm_140|24oct01 vbc stevor stevor 2 732 538831 539493 539679 539747 pf1 132 pf1_1:544202w|pfa0675w pf1_1:544202w pfa0675w chr1_2.glm_141|24oct01 glm pfb0980 chr11 stevor chimera pfb0980 chr11 stevor chimera 2 4392 chr11:61613c stevor fragment @ 548247 pfb0980 fragment @ 548373 chimera chr1, model chr2, df chr3, chr6, chr7, chr10, chr11 "pfb0980" 544202 544363 544476 548705 pf1 133 pf1_1:549319c|pfa0680c pf1_1:549319c pfa0680c chr1_2.glm_142|24oct01 glm stevor stevor 2 690 549319 549939 550034 550102 pf1 134 pf1_1:552298c|pfa0685c pf1_1:552298c pfa0685c chr1_2.glm_143|24oct01 glm stevor stevor 2 1044 552298 553272 553367 553435 pf1 135 pf1_1:554362w|pfa0690w pf1_1:554362w pfa0690w chr1_2.glm_144.1=gen_68=phat_102|24oct01 vbc stevor stevor 2 961 frameshift near 554796 554796w [A] 554362 554430 554628 555519 pf1 136 pf1_1:555770c|pfa0695c pf1_1:555770c pfa0695c chr1_2.glm_145|24oct01 vbc stevor pseudogene stevor pseudogene 2 1053 556363c [T] | 556173 [A] | 555937 [T] 555770 556747 556924 556998 pf1 137 pf1_1:559923c|pfa0700c pf1_1:559923c pfa0700c chr1_2.glm_147.2 chr1_p4001.glm_11 vbc stevor stevor 2 333 559923 560186 560362 560430 pf1 138 pf1_1:562486c|pfa0705c pf1_1:562486c pfa0705c chr1_2.glm_148.1|24oct01 vbc stevor pseudogene stevor pseudogene 2 655 562960c [CA] | 562781 [TT] 562486 563071 563188 563256 pf1 139 pf1_1:565425c|pfa0710c pf1_1:565425c pfa0710c chr1_2.glm_149|24oct01 glm stevor stevor 2 972 565425 566324 566493 566564 pf1 140 pf1_1:568237c|bis pf1_1:568237c bis pfa0710c chr1_1.glm_149.1|24oct01 vbc rifin pseudogene fragment rifin pseudogene fragment 1 372 one subtelomeric copy chr 2, 3, 4, 6, 10, 11, 12, 13, 14 two subtelomeric copies chr 1, 7, 9 group 1 = pf7_2:35640c, pf9_1:36430c is the model for this pseudogene 568237 568608 pf1 141 pf1_1:571206c|pfa0715c pf1_1:571206c pfa0715c chr1_2.glm_150|24oct01 vbc stevor stevor 2 633 571206 571769 571925 571993 pf1 142 pf1_1:573856c|pfa0720c|03oct02 pf1_1:573856c pfa0720c|03oct02 stevor pseudogene vbc 2 637 574411c [GT] | 574130 [AA] 573856 574423 574506 574574 pf1 143 pf1_1:579424w|pfa0725w pf1_1:579424w pfa0725w chr1_2.glm_152|24oct01 vbc 3 5778 579424 580216 580377 580642 580791 585509 pf1 144 pf1_1:586353c|pfa0730c pf1_1:586353c pfa0730c chr6_0050.glm_3|24oct01 vbc pseudogene pseudogene 1 236 c8:1257381c is the active gene; c1 & c6 are pseudogenes 586390c [AAa] 586353 586588 pf1 145 pf1_1:589111w|pfa0735w pf1_1:589111w pfa0735w chr1_2.glm_153|24oct01 vbc 2 882 cf chr8:1259878w 589111 589203 589326 590114 pf1 146 pf1_1:593569w|pfa0740w pf1_1:593569w pfa0740w chr1_2.glm_154|24oct01 glm rifin rifin 2 1107 593569 593622 593855 594907 pf1 147 pf1_1:596822w|pfa0745w pf1_1:596822w pfa0745w chr1_2.glm_155|24oct01 glm rifin rifin 2 1011 596822 596875 597037 597993 pf1 148 pf1_1:600185w|pfa0750w pf1_1:600185w pfa0750w chr1_2.glm_156|24oct01 vbc stevor stevor 2 906 600185 600253 600356 601192 pf1 149 pf1_1:602412w|pfa0755w pf1_1:602412w pfa0755w chr1_2.glm_157|24oct01 vbc var-c pseudogene var-c pseudogene 1 1301 unframeshifted model 603006w [GA] 602412 603712 pf1 150 pf1_1:605882w|pfa0760w pf1_1:605882w pfa0760w chr1_2.glm_158|24oct01 glm rifin rifin 2 1140 605882 605935 606166 607251 pf1 151 pf1_1:609110c|pfa0765c pf1_1:609110c pfa0765c chr1_2.glm_159|24oct01 vbc pfemp1 var pfemp1 var 2 6612 609110 610414 611307 616613