record GenBank ID history name product exons length notes frameshift 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 pf7 1 pf7_1:13003c|pre pf7_1:13003c pre mal7p1.1 chr4_3.glm_48|24oct01 glm rifin rifin 2 975 13003 13923 14154 14207 pf7 2 pf7_2:15088c|mal7p1.1 pf7_2:15088c mal7p1.1 chrblob_4244.glm_1+3|24oct01 vbc pfemp1 var pfemp1 var 2 10662 15088 16308 17045 26485 pf7 3 pf7_2:29298w|mal7p1.2 pf7_2:29298w mal7p1.2 chrblob_3435.gen_1|24oct01 vbc rifin rifin 2 1116 29298 29351 29507 30568 pf7 4 pf7_2:32711c|pf07_0001 pf7_2:32711c pf07_0001 olim pfg0015c chrblob_4014.glm_1|24oct01 glm stevor stevor 2 1080 32711 33721 33881 33949 pf7 5 pf7_2:35640c|bis pf7_2:35640c bis pf07_0001 chrblob_4014.glm_0.1|24oct01 vbc rifin pseudogene rifin pseudogene 2 426 copy of chr 1, 2, 3, 4, 7a, 7b, 9a, 9b, 10, 11, 12, 13, 14 group 1 = pf7_2:35640c, pf9_1:36430c 35640 36011 36232 36285 pf7 6 pf7_2:38762w|mal7p1.3a pf7_2:38762w mal7p1.3a olim pfg0017c chrblob_3583.glm_1|24oct01 vbc rifin rifin 2 926 chr9_1:39555..40741 24oct01 chr11:2019994..2018764 24oct01 chr13_4079:48101..49287 24oct01 39331w [AA] | 39450 [G] | 39499 [AA] 38762 38815 38971 39842 pf7 7 pf7_3:40597c|mal7p1.3 pf7_3:40597cp mal7p1.3 chr10_1.glm_466|24oct01 vbc stevor fragment stevor fragment 1 861 alignments e n d @ chr1 555519, chr2 884310, chr3 1010134 alignments e n d @ chr10 160394, chr11 80309, blob4251 270 40597 41457 pf7 8 pf7_4:42648w|mal7p1.4 pf7_4:42648w mal7p1.4 chrblob_4124.glm_2|24oct01 vbc stevor stevor 2 693 42648 42716 42791 43414 pf7 9 pf7_4:45613w|mal7p1.5 pf7_4:45613w mal7p1.5 chrblob_4124.glm_1|24oct01 vbc 2 708 45613 45681 45786 46424 pf7 10 pf7_4:47041c|pf07_0002 pf7_4:47041c pf07_0002 chrblob_4283.glm_2|24oct01 vbc pfb0980 rifin pseudogene pfb0980 rifin pseudogene 2 1246 chimera chr1, model chr2, cf chr3, chr6, chr7, chr10, chr11 "pfb0980" 48427c [T] | 48180 [AA] | 48016 [AG] | 48005 [GT] 47041 48228 48385 48442 pf7 11 pf7_4:50482c|pf07_0003 pf7_4:50482c pf07_0003 chrblob_4283.glm_3|24oct01 vbc 2 996 50482 51408 51551 51619 pf7 12 pf7_4:54454c|pf07_0004 pf7_4:54454c pf07_0004 chrblob_4283.glm_4|24oct01 glm 2 2895 54454 57234 57394 57507 pf7 13 pf7_4:59346w|mal7p1.6 pf7_4:59346w mal7p1.6 chrblob_3906.glm_1=chrblob_4283.glm_4.1|24oct01 glm stevor stevor 2 753 59346 59414 59555 60238 pf7 14 pf7_5:63052w|mal7p1.7 pf7_5:63052w mal7p1.7 chr7_0057.glm_1+2|24oct01 vbc 2 2017 frameshift near 64371 64371w [A] 63052 63237 63423 65253 pf7 15 pf7_5:66234c|pf07_0005 pf7_5:66234c pf07_0005 chr7_0057.glm_3|24oct01 glm 1 1275 66234 67508 pf7 16 pf7_6:69558w|pf07_0006 pf7_6:69558w pf07_0006 chr7_0055.glm_1|24oct01 glm starp antigen starp antigen 2 1785 69558 69629 69815 71527 pf7 17 pf7_6:74491w|pf07_0007 pf7_6:74491w pf07_0007 chr7_0087.glm_4|24oct01 glm 2 372 74491 74778 74999 75082 pf7 18 pf7_6:77754c|pf07_0008 pf7_6:77754c pf07_0008 chr7_0087.glm_3|24oct01 glm 2 762 77754 78338 78610 78786 pf7 19 pf7_6:82713w|pf07_0009 pf7_6:82713w pf07_0009 chr7_0087.glm_2|24oct01 glm 1 264 82713 82976 pf7 20 pf7_6:84271c|bis pf7_6:84271c bis pf07_0009 trna-ala-gct tigr 1 73 84271 84343 pf7 21 pf7_6:84847w|ter pf7_6:84847w ter pf07_0009 vbc trna-tyr-tac trna-tyr-tac 2 73 84847 84883 84895 84930 pf7 22 pf7_6:85942c|mal7p1.10|03oct02 pf7_6:85942c mal7p1.10|03oct02 vbc 4 324 85942 85982 86128 86229 86458 86566 86671 86742 pf7 23 pf7_6:88033w|pf07_0010 pf7_6:88033w pf07_0010 chr7_0107.glm_1|24oct01 glm 1 5532 88033 93564 pf7 24 pf7_6:94204w|pf07_0011 pf7_6:94204w pf07_0011 chr7_0107.glm_2|24oct01 glm 1 543 94204 94746 pf7 25 pf7_6:95303c|pf07_0012 pf7_6:95303c pf07_0012 chr7_0107.glm_3|24oct01 glm 1 4623 95303 99925 pf7 26 pf7_6:101338w|mal7p1.11 pf7_6:101338w mal7p1.11 03oct02 vbc 1 441 101338 101778 pf7 27 pf7_6:102168c|pf07_0013 pf7_6:102168c pf07_0013 chrblob_4172.glm_1|24oct01 glm 1 2463 102168 104630 pf7 28 pf7_6:108404w|mal7p1.12 pf7_6:108404w mal7p1.12 chr7_0005.glm_1+chr7_0065|24oct01 vbc 1 6905 frameshift @ 108978 108977w [AT] 108404 115308 pf7 29 pf7_6:116821w|mal7p1.13 pf7_6:116821w mal7p1.13 chrblob_3774.glm_1=chrblob_065:7089..9023|24oct01 vbc 10 810 116821 116824 116909 116973 117181 117279 117385 117474 117663 117757 117848 117940 118055 118121 118272 118408 118525 118597 118669 118755 pf7 30 pf7_6:119447c|mal7p1.14 pf7_6:119447c mal7p1.14 chrblob_3774.glm_1.1=chr7_0065:9715..10542|24oct01 vbc 1 828 119447 120274 pf7 31 pf7_6:122605w|pf07_0014 pf7_6:122605w pf07_0014 chr7_0075.glm_2|24oct01 vbc 1 3177 122605 125781 pf7 32 pf7_6:126121c|mal7p1.15 pf7_6:126121c mal7p1.15 chr7_0075.glm_1|24oct01 vbc 1 13076 frameshift near 126544 126545c [AA] 126121 139196 pf7 33 pf7_6:140289c|mal7p1.16 pf7_6:140289c mal7p1.16 chr7_0084.glm_1+chr7_0094.glm_1|24oct01 vbc 1 9807 140289 150095 pf7 34 pf7_6:152836w|mal7p1.17 pf7_6:152836w mal7p1.17 chr7_0030.glm_1|24oct01 glm 1 10678 frameshift @ 159574 159574w [T] 152836 163513 pf7 35 pf7_6:164107c|pf07_0015 pf7_6:164107c pf07_0015 chr7_0030.glm_2|24oct01 glm 1 3582 164107 167688 pf7 36 pf7_6:170471w|pf07_0016 pf7_6:170471w pf07_0016 chrblob_4253.glm_1|24oct01 glm 1 5580 170471 176050 pf7 37 pf7_6:177520w|pf07_0017 pf7_6:177520w pf07_0017 chr7_0102.glm_1|24oct01 glm 1 3033 177520 180552 pf7 38 pf7_6:181492c|mal7p1.18 pf7_6:181492c mal7p1.18 chr7_0102.glm_1.1=gen_3|24oct01 gen 1 4764 181492 186255 pf7 39 pf7_6:188779c|mal7p1.19 pf7_6:188779c mal7p1.19 chr7_0102.glm_2|24oct01 vbc 8 11682 188779 188804 189119 189255 189426 189560 189659 189819 189997 190118 190232 190328 190640 201562 201747 201827 pf7 40 pf7_6:206156w|pf07_0018 pf7_6:206156w pf07_0018 chr7_0006.glm_1|24oct01 vbc 1 4014 206156 210169 pf7 41 pf7_6:210914c|pf07_0019 pf7_6:210914c pf07_0019 chr7_0006.glm_1.1=gen_8=phat_2|24oct01 gen phat 1 3894 210914 214807 pf7 42 pf7_6:216652c|mal7p1.20 pf7_6:216652c mal7p1.20 chr7_0006.glm_2|24oct01 glm 1 1119 216652 217770 pf7 43 pf7_6:219013c|pf07_0020 pf7_6:219013c pf07_0020 chr7_0006.glm_3|24oct01 vbc 2 3642 219013 219563 219816 222906 pf7 44 pf7_6:225036w|pf07_0021 pf7_6:225036w pf07_0021 chr7_0006.glm_4|24oct01 glm 1 2970 225036 228005 pf7 45 pf7_6:228843w|pf07_0022 pf7_6:228843w pf07_0022 chr7_0006.glm_5|24oct01 vbc 1 4596 228843 233438 pf7 46 pf7_6:234729w|mal7p1.21 pf7_6:234729w mal7p1.21 chr7_0006.glm_7|24oct01 glm 1 2481 234729 237209 pf7 47 pf7_6:237728c|pf07_0023 pf7_6:237728c pf07_0023 chr7_0006.glm_6|24oct01 glm 1 2466 237728 240193 pf7 48 pf7_6:242777c|pf07_0024 pf7_6:242777c pf07_0024 chrblob_4264.glm_1|24oct01 glm 2 8445 242777 243389 243630 251461 pf7 49 pf7_7:252978w|mal7p1.22 pf7_7:252978w mal7p1.22 chrblob_4152.glm_1|24oct01 glm 1 4806 252978 257783 pf7 50 pf7_7:258687w|pf07_0025 pf7_7:258687w pf07_0025 chrblob_3974.glm_1|24oct01 glm 1 735 258687 259421 pf7 51 pf7_7:262401w|pf07_0026 pf7_7:262401w pf07_0026 chr7_0014.glm_13|24oct01 glm 1 2886 262401 265286 pf7 52 pf7_7:266705w|mal7p1.23 pf7_7:266705w mal7p1.23 chr7_0014.glm_12|24oct01 glm 3 3552 266705 270123 270245 270304 270407 270479 pf7 53 pf7_7:271629w|mal7p1.24 pf7_7:271629w mal7p1.24 chr7_0014.glm_11|24oct01 vbc 1 780 271629 272408 pf7 54 pf7_7:273407w|mal7p1.25 pf7_7:273407w mal7p1.25 chr7_0014.glm_10|24oct01 glm 3 2607 273407 275711 275905 276107 276274 276372 pf7 55 pf7_7:277597c|pf07_0027 pf7_7:277597c pf07_0027 chr7_0014.glm_9|24oct01 vbc 1 210 277597 277806 pf7 56 pf7_7:278946c|pf07_0028 pf7_7:278946c pf07_0028 chr7_0014.glm_7+8|24oct01 glm 2 2865 278946 279752 280039 282096 pf7 57 pf7_7:282719w|mal7p1.26 pf7_7:282719w mal7p1.26 chr7_0014.glm_6|24oct01 vbc 5 705 282719 282754 282929 283417 283525 283593 283790 283862 283971 284008 pf7 58 pf7_7:286295w|pf07_0029 pf7_7:286295w pf07_0029 chr7_0014.glm_5|24oct01 glm hsp86 af030694 dd2 hsp86 af030694 dd2 2 2238 286295 287725 288511 289317 pf7 59 pf7_7:290286c|pf07_0030 pf7_7:290286c pf07_0030 chr7_0014.glm_4|24oct01 glm orf3+orf1 af030694 dd2 orf3+orf1 af030694 dd2 1 2739 question experimental evidence af030694 has a frameshift 290286 293024 pf7 60 pf7_7:294176c|pf07_0031 pf7_7:294176c pf07_0031 chr7_0014.glm_3=021.glm_1|24oct01 vbc orf2 af030694 orf2 af030694 2 759 294176 294904 295039 295068 pf7 61 pf7_7:296205c|pf07_0032 pf7_7:296205c pf07_0032 chr7_0014.glm_2=021.glm_2|24oct01 vbc cg8 af030694 dd2 experimental cg8 af030694 dd2 experimental 1 623 296812c [TT] 296205 296827 pf7 62 pf7_7:300415w|pf07_0033 pf7_7:300415w pf07_0033 chr7_0021.glm_3|24oct01 glm cg4 af030694 dd2 experimental cg4 af030694 dd2 experimental 1 2622 300415 303036 pf7 63 pf7_7:303994c|pf07_0034 pf7_7:303994c pf07_0034 chr7_0021.glm_4|24oct01 glm cg3 af030694 experimental cg3 af030694 experimental 1 954 303994 304947 pf7 64 pf7_7:307926w|mal7p1.27 pf7_7:307926w mal7p1.27 chr7_0021.glm_5|24oct01 wellems pfcrt pf7_7:307926w mal7p1.27 chr7_0021.glm_5|24oct01 wellems pfcrt 13 1275 307926 308016 308194 308462 308642 308814 308987 309119 309273 309344 309468 309543 309640 309722 309850 309900 310038 310094 310243 310335 310529 310573 310720 310774 310944 311020 pf7 65 pf7_7:312918w|pf07_0035 pf7_7:312918w pf07_0035 chr7_0021.glm_6|24oct01 glm cg9+cg1 af030694 experimental cg9+cg1 af030694 experimental 1 3747 312918 316664 pf7 66 pf7_7:317046c|pf07_0036 pf7_7:317046c pf07_0036 chr7_0021.glm_7|24oct01 glm cg6 af030694 cg6 af030694 1 819 317046 317864 pf7 67 pf7_7:318263c|pf07_0037 pf7_7:318263c pf07_0037 chr7_0021.glm_8|24oct01 glm cg2 af030694 cg2 af030694 1 8190 318263 326452 pf7 68 pf7_7:327939c|pf07_0038 pf7_7:327939c pf07_0038 chr7_0069.glm_1|24oct01 glm cg7 af030694 cg7 af030694 2 3846 327939 329801 329955 331937 pf7 69 pf7_7:333426w|pf07_0039 pf7_7:333426w pf07_0039 chr7_0031.glm_2|24oct01 glm 2 408 333426 333624 333841 334049 pf7 70 pf7_7:334707c|mal7p1.28 pf7_7:334707c mal7p1.28 chr7_0031.glm_3|24oct01 vbc 2 3579 334707 335320 335497 338461 pf7 71 pf7_7:339792c|pf07_0040 pf7_7:339792c pf07_0040 chr7_0031.glm_4|24oct01 vbc 1 1107 339792 340898 pf7 72 pf7_7:342603w|bis pf7_7:342603w bis pf07_0040 chr7_0031.glm_5|24oct01 glm 1 195 342603 342797 pf7 73 pf7_7:343260c|mal7p1.29 pf7_7:343260c mal7p1.29 chr7_0031.glm_6+7|24oct01 vbc 3 6933 343260 344332 344569 347217 347374 350584 pf7 74 pf7_7:352210c|mal7p1.30 pf7_7:352210c mal7p1.30 c7_038.glm_1+2+chrblob_0065.glm_1|24oct01 vbc 7 9804 352210 357504 357698 357929 358187 358914 359129 359273 359451 359578 359694 360422 360645 363191 pf7 75 pf7_7:364752w|pf07_0041 pf7_7:364752w pf07_0041 chr7_0002.glm_1|24oct01 glm 1 1380 364752 366131 pf7 76 pf7_7:367800w|pf07_0042 pf7_7:367800w pf07_0042 chr7_0002.glm_2|24oct01 vbc 1 8733 367800 376532 pf7 77 pf7_7:377196c|mal7p1.31 pf7_7:377196c mal7p1.31 chr7_0002.glm_3|24oct01 vbc 4 612 377196 377375 377463 377631 377767 377943 378151 378236 pf7 78 pf7_7:379318w|mal7p1.32 pf7_7:379318w mal7p1.32 chr7_0002.glm_5|24oct01 vbc 1 1098 379318 380415 pf7 79 pf7_7:380811c|mal7p1.33 pf7_7:380811c mal7p1.33 chr7_0002.glm_6+7|24oct01 vbc 5 810 380811 380887 381035 381121 381272 381400 381572 381800 381960 382247 pf7 80 pf7_7:383163c|pf07_0043 pf7_7:383163c pf07_0043 chr7_0002.glm_9|24oct01 vbc 2 453 383163 383456 383675 383833 pf7 81 pf7_7:386064c|pf07_0044 pf7_7:386064c pf07_0044 chr7_0002.glm_10|24oct01 vbc 1 606 386064 386669 pf7 82 pf7_7:387396c|pf07_0045 pf7_7:387396c pf07_0045 chr7_0002.glm_11|24oct01 glm 1 1131 387396 388526 pf7 83 pf7_7:389533w|pf07_0046 pf7_7:389533w pf07_0046 chr7_0089.glm_3|24oct01 glm 1 1200 389533 390732 pf7 84 pf7_7:391976c|pf07_0047 pf7_7:391976c pf07_0047 chr7_0089.glm_2|24oct01 glm 1 3690 391976 395665 pf7 85 pf7_7:397214c|mal7p1.34 pf7_7:397214c mal7p1.34 chr7_0089.glm_1|24oct01 glm 1 714 397214 397927 pf7 86 pf7_7:399933w|mal7p1.35 pf7_7:399933w mal7p1.35 vbc|03oct02 vbc |03oct02 vbc 1 3003 399933 402935 pf7 87 pf7_7:404031w|mal7p1.36 pf7_7:404031w mal7p1.36 vbc|03oct02 vbc |03oct02 vbc 1 360 404031 404390 pf7 88 pf7_7:405103c|mal7p1.37 pf7_7:405103c mal7p1.37 vbc|03oct02 vbc |03oct02 vbc 1 2187 405103 407289 pf7 89 pf7_7:409940w|mal7p1.38 pf7_7:409940w mal7p1.38 chrblob_0073.glm_2|24oct01 glm 1 2067 409940 412006 pf7 90 pf7_7:413114c|post pf7_7:413114c post olim pf07_0048 vbc nc-rna pfemp1 promoter nc-rna pfemp1 promoter 1 197 ? assembly @413113 413114 413310 pf7 91 pf7_7:416653c|olim pf7_7:416653c olim pf07_0048 chr7_0032.glm_10|24oct01 vbc pfemp1 var pfemp1 var 2 6648 416653 418047 418876 424128 pf7 92 pf7_7:427788c|pre pf7_7:427788c pre olim pf07_0048 vbc nc-rna pfemp1 promoter nc-rna pfemp1 promoter 1 204 427788 427991 pf7 93 pf7_7:429734c|mal7p1.43 pf7_7:429734c mal7p1.43 chr7_0032.glm_9|24oct01 vbc stevor pseudogene stevor pseudogene 2 1107 429734 430771 430955 431023 pf7 94 pf7_7:432041c|olim pf7_7:432041c olim pf07_0049 chr7_0032.glm_6+8|24oct01 vbc pfemp1 var pfemp1 var 2 6828 432041 433390 434357 439834 pf7 95 pf7_7:443171c|pre pf7_7:443171c pre olim pf07_0049 vbc nc-rna pfemp1 promoter nc-rna pfemp1 promoter 1 194 443171 443364 pf7 96 pf7_7:445046c|mal7p1.47|03oct02 pf7_7:445046c mal7p1.47|03oct02 vbc stevor pseudogene stevor pseudogene 2 1018 446272 corrected to 446244 in misc feature e x o n 1 445870 e x o n 2 predicted s t a r t inside e x o n 2 stevor = 23 aa, not rifin = 18 aa ttg @ 446183 e n d s rifin e x o n 1 frameshift @ 445925 445925c [A] 445046 445994 446176 446244 pf7 97 pf7_7:447609c|olim pf7_7:447609c olim pf07_0050 chr7_0032.glm_3|24oct01 vbc pfemp1 var pfemp1 var 2 6804 447609 449045 449857 455223 pf7 98 pf7_7:456861c|olim pf7_7:456861c olim mal7p1.50 chr7_0032.glm_2|24oct01 vbc pfemp1 var pfemp1 var 2 6195 456861 458108 458835 463781 pf7 99 pf7_7:467609c|mal7p1.52 pf7_7:467609c mal7p1.52 chr7_0051.glm6+7|24oct01 glm stevor stevor 2 1137 taa at 468109 467609 468673 468792 468863 pf7 100 pf7_7:471429c|olim pf7_7:471429c olim pf07_0051 chr7_0051.glm_5|24oct01 vbc pfemp1 var pfemp1 var 2 6648 471429 472781 473717 479011 pf7 101 pf7_7:482596c|pre pf7_7:482596c pre olim pf07_0051 vbc nc-rna pfemp1 promoter nc-rna pfemp1 promoter 1 194 482596 482789 pf7 102 pf7_7:486089c|olim pf7_7:486089c olim mal7p1.55 chr7_0051.glm_4|24oct01 vbc pfemp1 var pfemp1 var 2 6720 486089 487525 488344 493626 pf7 103 pf7_7:495029c|olim pf7_7:495029c olim mal7p1.56 chr7_0051.glm_2|24oct01 vbc pfemp1 var pfemp1 var 2 6579 495029 496261 497091 502436 pf7 104 pf7_7:506844w|olim pf7_7:506844w olim mal7p1.57 chr7_0009.glm_11|24oct01 glm stevor stevor 2 1041 506844 506912 507113 508084 pf7 105 pf7_7:510356w|mal7p1.58 pf7_7:510356w mal7p1.58 chr7_0009.glm_10|24oct01 vbc stevor stevor 2 696 510356 510424 510517 511143 pf7 106 pf7_7:511722c|mal7p1.59|03oct02 pf7_7:511722c mal7p1.59|03oct02 vbc pseudogene pseudogene 1 1050 512700c [TA] | 512447 [A] 511722 512771 pf7 107 pf7_7:514000w|mal7p1.60+mal7p1.61+mal7p1.62+ pf7_7:514000w mal7p1.60+mal7p1.61+mal7p1.62+mal7p1.63 chr7_0009.glm_9|24oct01 vbc var-c pseudogene var-c pseudogene 1 1226 514243w [T] | 515000 [AAAA] 514000 515225 pf7 108 pf7_7:517161w|mal7p1.64 pf7_7:517161w mal7p1.64 chr7_0009.glm_7|24oct01 vbc 2 1074 517161 517263 517473 518443 pf7 109 pf7_7:519088w|mal7p1.65 pf7_7:519088w mal7p1.65 chr7_0009.glm_6|24oct01 glm 1 2865 519088 521952 pf7 110 pf7_7:522636w|mal7p1.66 pf7_7:522636w mal7p1.66 chr7_0009.glm_4+5|24oct01 vbc 2 2754 522636 524703 524885 525570 pf7 111 pf7_7:526166c|mal7p1.67 pf7_7:526166c mal7p1.67 chr7_0009.glm_3|24oct01 vbc 10 777 526166 526297 526412 526539 526654 526699 526799 526908 527010 527051 527189 527264 527329 527406 527494 527523 527670 527724 528145 528224 pf7 112 pf7_7:529082c|pf07_0052 pf7_7:529082c pf07_0052 chr7_0009.glm_2|24oct01 vbc 2 723 529082 529117 529317 530003 pf7 113 pf7_7:531769c|pf07_0053 pf7_7:531769c pf07_0053 chr7_0009.glm_1|24oct01 glm 1 10710 531769 542478 pf7 114 pf7_8:547244c|pf07_0054|03oct02 pf7_8:547244c pf07_0054|03oct02 sanger qimr:ts etramp etramp 1 372 547244 547615 pf7 115 pf7_8:550862c|pf07_0055 pf7_8:550862c pf07_0055 chr7_0088.glm_1|24oct01 glm 1 2049 550862 552910 pf7 116 pf7_8:554976w|pf07_0056 pf7_8:554976w pf07_0056 chr7_0088.glm_2|24oct01 vbc 1 4086 554976 559061 pf7 117 pf7_8:561013w|mal7p1.68 pf7_8:561013w mal7p1.68 chrblob_4230.glm_1+2|24oct01 vbc 5 3966 561013 561128 561270 561348 561538 561654 561794 561993 562358 565811 pf7 118 pf7_8:566502c|mal7p1.69 pf7_8:566502c mal7p1.69 chrblob_4230.glm_3|24oct01 vbc 3 684 566502 566543 566686 567314 567537 567549 pf7 119 pf7_8:569098w|pf07_0057 pf7_8:569098w pf07_0057 chrblob_4248.glm_1|24oct01 glm 1 1212 569098 570309 pf7 120 pf7_8:572127w|pf07_0058 pf7_8:572127w pf07_0058 chrblob_4248.glm_2|24oct01 glm 1 1728 572127 573854 pf7 121 pf7_8:574937w|mal7p1.70 pf7_8:574937w mal7p1.70 trna-asp-gac sanger 1 72 574937 575008 pf7 122 pf7_8:575798w|mal7p1.71 pf7_8:575798w mal7p1.71 trna-leu-ctt sanger 1 80 575798 575877 pf7 123 pf7_8:576877c|mal7p1.72 pf7_8:576877c mal7p1.72 trna-ser-agc vbc 1 82 576877 576958 pf7 124 pf7_8:577593w|pf07_0059 pf7_8:577593w pf07_0059 chrblob_4248.glm_3+chrblob_4245.glm_2.1|24oct01 vbc 1 969 577593 578561 pf7 125 pf7_8:578752c|pf07_0060 pf7_8:578752c pf07_0060 chrblob_4245.glm_2+chrblob_4248.glm_4|24oct01 glm_2 _2 2 327 578752 578909 579104 579272 pf7 126 pf7_8:580203c|pf07_0061 pf7_8:580203c pf07_0061 chrblob_4245.glm_1|24oct01 glm 1 6621 580203 586823 pf7 127 pf7_8:588882c|mal7p1.73 pf7_8:588882c mal7p1.73 chrblob_4312.glm_1|24oct01 glm 3 1530 588882 589013 589171 589272 589538 590833 pf7 128 pf7_8:592076c|mal7p1.74 pf7_8:592076c mal7p1.74 chrblob_4312.glm_2|24oct01 vbc 3 621 592076 592101 592278 592316 592435 592990 pf7 129 pf7_8:593685c|mal7p1.75|03oct02 pf7_8:593685c mal7p1.75|03oct02 sanger 3 216 593685 593740 593886 593980 594136 594200 pf7 130 pf7_8:595211w|pf07_0062 pf7_8:595211w pf07_0062 chrblob_4312.glm_3|24oct01 glm 1 2265 595211 597475 pf7 131 pf7_8:598666w|pf07_0063 pf7_8:598666w pf07_0063 chrblob_4312.glm_4|24oct01 glm qimr:ts etramp etramp 1 360 product early transcribed membrane protein 598666 599025 pf7 132 pf7_8:599743c|pf07_0064 pf7_8:599743c pf07_0064 chrblob_4312.glm_5|24oct01 glm 1 1305 599743 601047 pf7 133 pf7_8:603382w|pf07_0065 pf7_8:603382w pf07_0065 chrblob_4312.glm_6|24oct01 glm 1 1671 603382 605052 pf7 134 pf7_8:607353w|chrblob_4312.glm_7|24oct01 pf7_8:607353w chrblob_4312.glm_7|24oct01 glm 1 3375 607353 610727 pf7 135 pf7_8:611842c|pf07_0067 pf7_8:611842c pf07_0067 chrblob_4254.glm_1|24oct01 glm 1 3210 611842 615051 pf7 136 pf7_8:616612w|mal7p1.76 pf7_8:616612w mal7p1.76 chrblob_4254.glm_2|24oct01 vbc 1 2499 616612 619110 pf7 137 pf7_8:621424w|mal7p1.77 pf7_8:621424w mal7p1.77 chrblob_4227.glm_3|24oct01 glm 2 1569 621424 622856 622976 623111 pf7 138 pf7_8:624153w|mal7p1.78|03oct02 pf7_8:624153w mal7p1.78|03oct02 vbc 10 570 624153 624207 624334 624392 624508 624546 624651 624667 624773 624813 624890 624949 625045 625080 625179 625315 625395 625466 625557 625610 pf7 139 pf7_8:625860w|mal7p1.79 pf7_8:625860w mal7p1.79 chrblob_4227.glm_1+2|03oct02 sanger/vbc /vbc 10 1341 625860 625885 626118 626335 626839 626981 627105 627220 627347 627490 627647 627740 627865 628071 628176 628300 628460 628559 628691 628858 pf7 140 pf7_8:629439w|pf07_0068 pf7_8:629439w pf07_0068 chrblob_4133.glm_1|24oct01 glm 2 1641 629439 629729 630013 631362 pf7 141 pf7_8:632252w|pf07_0069 pf7_8:632252w pf07_0069 chrblob_4164.glm_1+chrblob4133.glm_1.1|24oct01 glm 1 3018 632252 635269 pf7 142 pf7_8:636213c|mal7p1.81 pf7_8:636213c mal7p1.81 chrblob_4148.glm_1|24oct01 vbc 3 984 636213 637060 637286 637331 637550 637639 pf7 143 pf7_8:640513w|pf07_0070|03oct02 pf7_8:640513w pf07_0070|03oct02 sanger 1 969 ? assembly 640513 641481 pf7 144 pf7_8:642721w|mal7p1.82|03oct02 pf7_8:642721w mal7p1.82|03oct02 vbc 13 852 642721 642723 643002 643163 643334 643383 643519 643568 643654 643691 643936 643992 644208 644294 644399 644455 644586 644618 644749 644880 645003 645056 645130 645186 645281 645352 pf7 145 pf7_8:646159w|mal7p1.83 pf7_8:646159w mal7p1.83 chr7_0033.glm_1|24oct01 vbc 2 2733 646159 648843 648997 649044 pf7 146 pf7_8:649334c|mal7p1.84|03oct02 pf7_8:649334c mal7p1.84|03oct02 sanger 2 1317 649334 649506 649663 650806 pf7 147 pf7_8:653133w|olim pf7_8:653133w olim mal7p1.86 chr7_0106.glm_1+2|24oct01 glm 4 1179 653133 653618 653787 654021 654284 654655 654757 654842 pf7 148 pf7_8:656020w|pf07_0071 pf7_8:656020w pf07_0071 chr7_0106.glm_3|24oct01 glm 1 2256 656020 658275 pf7 149 pf7_8:659906w|pf07_0072 pf7_8:659906w pf07_0072 chr7_0106.glm_4|24oct01 glm 2 1587 659906 660701 661049 661839 pf7 150 pf7_8:662863c|mal7p1.87 pf7_8:662863c mal7p1.87 chr7_0106.glm_5+7+8|24oct01 vbc 8 3117 662863 662974 663159 663216 663318 663486 663684 663812 663997 664011 664119 664181 664273 664391 664569 667020 pf7 151 pf7_8:668937c|pf07_0073 pf7_8:668937c pf07_0073 chr7_0106.glm_10|24oct01 glm 1 1620 668937 670556 pf7 152 pf7_8:671500c|pf07_0074 pf7_8:671500c pf07_0074 chr7_0106.glm_11|24oct01 glm 1 4593 671500 676092 pf7 153 pf7_8:677094c|mal7p1.88 pf7_8:677094c mal7p1.88 chr7_0106.glm_12+13|03oct02 sanger/vbc /vbc 8 1350 677094 677150 677390 677536 677699 677765 677880 677974 678079 678139 678253 678350 678478 678597 678703 679407 pf7 154 pf7_8:680284c|mal7p1.89 pf7_8:680284c mal7p1.89 chr7_0097.glm2+3+4+chr7_0092+chr7_0106.glm_13.1|24oct01 vbc 11 17538 680284 680409 680645 680932 681360 695067 695280 695596 695782 695925 696082 696366 696580 697129 697260 698065 698167 699275 699410 699512 699679 699780 pf7 155 pf7_8:700657c|mal7p1.91 pf7_8:700657c mal7p1.91 chr7_0097.glm_1|24oct01 glm 2 8088 700657 706771 706910 708882 pf7 156 pf7_9:715126c|mal7p1.92 pf7_9:715126c mal7p1.92 chr7_0012.glm_1+2|24oct01 vbc 7 7632 715126 720231 720346 721652 721778 722467 722590 722775 722915 723130 723222 723285 723398 723460 pf7 157 pf7_9:725263w|mal7p1.93 pf7_9:725263w mal7p1.93 chr7_0012.glm_4|24oct01 vbc 2 390 725263 725445 725634 725840 pf7 158 pf7_9:727965w|mal7p1.94 pf7_9:727965w mal7p1.94 chr7_0012.glm_5|24oct01 vbc 4 429 occam's razor 727965 728063 728156 728260 728341 728430 728575 728709 pf7 159 pf7_9:729800w|mal7p1.95 pf7_9:729800w mal7p1.95 chr7_0012.glm_6|24oct01 vbc 10 3351 729800 729819 729947 729998 730166 730227 730328 730391 730501 730606 730719 730768 730847 730909 731008 733057 733160 733209 733297 734130 pf7 160 pf7_9:734374c|pf07_0075 pf7_9:734374c pf07_0075 chr7_0012.glm_7|24oct01 glm 1 1374 734374 735747 pf7 161 pf7_9:736455c|mal7p1.76 pf7_9:736455c mal7p1.76 chr7_0012.glm_8+9|24oct01 vbc 5 822 736455 736623 736776 736999 737134 737316 737494 737704 737842 737876 pf7 162 pf7_9:738782w|mal7p1.97 pf7_9:738782w mal7p1.97 chr7_0012.glm_10|03oct02 sanger/vbc /vbc 2 705 738782 739198 739399 739686 pf7 163 pf7_9:740960w|mal7p1.98mal7p1.98chr7_0012.gl pf7_9:740960w mal7p1.98mal7p1.98chr7_0012.glm_11|24oct01 glm 1 462 740960 741421 pf7 164 pf7_9:741815.3c|mal7p1.99|03oct02 pf7_9:741815.3c mal7p1.99|03oct02 sanger|alt3 |alt3 4 540 ...aagctag ag probability <= 50% or requires ancilliary structure 741815 742000 742150 742404 742536 742599 742815 742849 pf7 165 pf7_9:741815.1c|mal7p1.99|03oct02 pf7_9:741815.1c mal7p1.99|03oct02 vbc|alt1 |alt1 4 354 741815 742000 742094 742162 742536 742599 742815 742849 pf7 166 pf7_9:742385.2c|mal7p1.99|03oct02 pf7_9:741815.2c mal7p1.99|03oct02 vbc|alt2 |alt2 3 123 742385 742408 742536 742599 742815 742849 pf7 167 pf7_9:743933w|mal7p1.100 pf7_9:743933w mal7p1.100 chr7_0012.glm_12+13|24oct01 vbc 7 927 743933 744015 744157 744223 744334 744427 744586 744720 744833 745110 745221 745340 745506 745655 pf7 168 pf7_9:747320w|pf07_0077 pf7_9:747320w pf07_0077 chr7_0012.glm_14|24oct01 glm 1 3099 747320 750418 pf7 169 pf7_9:751223c|mal7p1.102 pf7_9:751223c mal7p1.102 chr7_0013.glm_12|24oct01 glm 1 5196 751223 756418 pf7 170 pf7_9:757839c|pf07_0078 pf7_9:757839c pf07_0078 chr7_0013.glm_11|24oct01 glm 2 1389 757839 758462 758715 759479 pf7 171 pf7_9:761567c|pf07_0079 pf7_9:761567c pf07_0079 chr7_0013.glm_10|24oct01 vbc 2 522 761567 762013 762243 762317 pf7 172 pf7_9:764408w|pf07_0080 pf7_9:764408w pf07_0080 chr7_0013.glm_9|24oct01 vbc 3 414 764408 764492 764839 765000 765146 765312 pf7 173 pf7_9:766277c|pf07_0081 pf7_9:766277c pf07_0081 chr7_0013.glm_8|24oct01 glm 1 1362 766277 767638 pf7 174 pf7_9:768752w|pf07_0082 pf7_9:768752w pf07_0082 chr7_0013.glm_6|24oct01 glm 1 10206 768752 778957 pf7 175 pf7_9:779620w|mal7p1.104 pf7_9:779620w mal7p1.104 chr7_0013.glm_7|24oct01 vbc 2 588 779620 780106 780225 780325 pf7 176 pf7_9:780690c|pf07_0083 pf7_9:780690c pf07_0083 chr7_0013.glm_5|24oct01 glm 1 768 780690 781457 pf7 177 pf7_9:782279w|pf07_0084 pf7_9:782279w pf07_0084 chr7_0013.glm_4|24oct01 vbc 2 366 782279 782509 782637 782771 pf7 178 pf7_9:783290c|mal7p1.105|03oct02 pf7_9:783290c mal7p1.105|03oct02 sanger 2 315 783290 783518 783603 783688 pf7 179 pf7_9:785761w|pf07_0085 pf7_9:785761w pf07_0085 chr7_0013.glm_2+3|24oct01 vbc 2 1929 785761 787315 787440 787813 pf7 180 pf7_9:789171w|mal7p1.106 pf7_9:789171w mal7p1.106 chr7_0013.glm_1.1|24oct01 vbc 6 405 789171 789228 789342 789413 789572 789645 789824 789924 790056 790112 790270 790312 pf7 181 pf7_9:790641c|mal7p1.107 pf7_9:790641c mal7p1.107 chr7_0013.glm_1|03oct02 sanger/vbc /vbc 7 693 790641 790748 790853 791013 791205 791254 791353 791469 791574 791694 791806 791896 792173 792217 pf7 182 pf7_9:794511w|mal7p1.108+mal7p1.109 pf7_9:794511w mal7p1.108+mal7p1.109 chrblob_4276.glm_1|24oct01 vbc 4 6498 794511 794603 794810 794997 795319 801123 801465 801876 pf7 183 pf7_9:802576w|mal7p1.110 pf7_9:802576w mal7p1.110 chrblob_4276.glm_2+chrblob4293.glm_4.1|24oct01 vbc 7 597 802576 802672 802861 803029 803147 803207 803285 803362 803470 803510 803718 803823 803918 803962 pf7 184 pf7_9:804374w|mal7p1.111 pf7_9:804374w mal7p1.111 chrblob_4293.glm_2+3+4|24oct01 vbc 4 810 804374 804451 804609 804678 804809 805314 805457 805612 pf7 185 pf7_9:806968w|pf07_0086 pf7_9:806968w pf07_0086 chrblob_4293.glm_1|24oct01 glm 2 10380 806968 810219 810369 817496 pf7 186 pf7_9:819260w|pf07_0087 pf7_9:819260w pf07_0087 chrblob_4327.glm_1|24oct01 glm 1 735 819260 819994 pf7 187 pf7_9:820784c|mal7p1.112 pf7_9:820784c mal7p1.112 chrblob_4327.glm_2|24oct01 glm 1 2859 820784 823642 pf7 188 pf7_9:825054w|mal7p1.113 pf7_9:825054w mal7p1.113 chrblob_4327.glm_3|24oct01 glm 1 2757 825054 827810 pf7 189 pf7_9:829518w|mal7p1.114 pf7_9:829518w mal7p1.114 chrblob_4327.glm_4|24oct01 vbc 6 678 829518 829620 829801 829890 829985 830107 830213 830342 830456 830537 830705 830854 pf7 190 pf7_9:831340w|mal7p1.115 pf7_9:831340w mal7p1.115 chrblob_4327.glm_5|24oct01 glm 1 2340 831340 833679 pf7 191 pf7_9:834285c|pf07_0088 pf7_9:834285c pf07_0088 chrblob_4327.glm_6|24oct01 glm 2 588 834285 834794 834913 834990 pf7 192 pf7_9:838323w|pf07_0089 pf7_9:838323w pf07_0089 chrblob_4327.glm_7|24oct01 glm 1 1404 838323 839726 pf7 193 pf7_9:841105w|mal7p1.117 pf7_9:841105w mal7p1.117 chrblob_4327.glm_8|24oct01 vbc 3 321 841105 841255 841391 841453 841615 841721 pf7 194 pf7_9:844602w|pf07_0090 pf7_9:844602w pf07_0090 chrblob_4327.glm_9|24oct01 glm 1 738 844602 845339 pf7 195 pf7_9:846849w|mal7p1.118 pf7_9:846849w mal7p1.118 chrblob_4327.glm_10|24oct01 glm 1 1212 846849 848060 pf7 196 pf7_9:849189w|mal7p1.119 pf7_9:849189w mal7p1.119 chrblob_4327.glm_11|24oct01 glm 1 2250 849189 851438 pf7 197 pf7_9:852275c|mal7p1.120 pf7_9:852275c mal7p1.120 chr7_0103.glm_8.1+chrblob_4327.glm_12|24oct01 vbc 1 3666 852275 855940 pf7 198 pf7_9:857610w|mal7p1.122 pf7_9:857610w mal7p1.122 chr7_0103.glm_8|24oct01 vbc 3 1182 857610 857659 857858 857904 858085 859169 pf7 199 pf7_9:859746c|pf07_0091 pf7_9:859746c pf07_0091 chr7_0103.glm_7|24oct01 vbc 2 876 859746 860566 860789 860843 pf7 200 pf7_9:861712c|pf07_0092 pf7_9:861712c pf07_0092 chr7_0103.glm_6|24oct01 glm 1 1809 861712 863520 pf7 201 pf7_9:864857w|pf07_0093 pf7_9:864857w pf07_0093 chr7_0103.glm_5|24oct01 vbc 2 240 864857 864939 865117 865273 pf7 202 pf7_9:866196w|pf07_0094 pf7_9:866196w pf07_0094 chr7_0103.glm_4|24oct01 glm 1 1740 866196 867935 pf7 203 pf7_9:868534c|mal7p1.123 pf7_9:868534c mal7p1.123 chr7_0103.glm_3|24oct01 vbc 11 900 868534 868575 868685 868780 868902 868976 869052 869132 869247 869324 869496 869613 869716 869739 869896 870070 870177 870282 870381 870429 870553 870608 pf7 204 pf7_9:871662c|pf07_0095 pf7_9:871662c pf07_0095 chr7_0103.glm_2|24oct01 glm 1 900 871662 872561 pf7 205 pf7_9:873318c|pf07_0096 pf7_9:873318c pf07_0096 chr7_0103.glm_1|24oct01 glm 1 1386 873318 874703 pf7 206 pf7_9:875483w|mal7p1.124 pf7_9:875483w mal7p1.124 chr7_0058.glm_1+2|24oct01 vbc 4 1077 875483 875822 875946 876000 876234 876296 876479 877097 pf7 207 pf7_9:878591w|mal7p1.125 pf7_9:878591w mal7p1.125 chr7_0058.glm_3|24oct01 vbc 1 2643 878591 881233 pf7 208 pf7_9:881745c|pf07_0097 pf7_9:881745c pf07_0097 chr7_0058.glm_4|24oct01 glm 1 4269 881745 886013 pf7 209 pf7_9:887603c|pf07_0098 pf7_9:887603c pf07_0098 chr7_0058.glm_5|24oct01 glm 1 681 887603 888283 pf7 210 pf7_9:889423w|pf07_0099 pf7_9:889423w pf07_0099 chr7_0058.glm_5.1=gen_2|03oct02 gen/sanger /sanger 3 450 cf c7_058 if 889423 = g then initiation at 889588 889423 889656 889843 889915 890048 890190 pf7 211 pf7_9:890970w|pf07_0100 pf7_9:890970w pf07_0100 chr7_0058.glm_6|24oct01 vbc 1 3099 890970 894068 pf7 212 pf7_9:896057w|pf07_0101 pf7_9:896057w pf07_0101 chr7_0040.glm_1|24oct01 vbc 4 6573 896057 902245 902450 902613 902742 902812 902910 903058 pf7 213 pf7_9:903526c|mal7p1.126 pf7_9:903526c mal7p1.126 chr7_0039.glm_2|24oct01 vbc 4 3669 903526 903579 903694 903827 903938 904035 904189 907571 pf7 214 pf7_9:909160w|mal7p1.127+mal7p1.128 pf7_9:909160w mal7p1.127+mal7p1.128 chr7_0039.glm_1+chr7_0046.glm_2|24oct01 vbc pseudogene pseudogene 1 5809 914377w [AG] | 914511 [AT] 909160 914968 pf7 215 pf7_9:916118c|mal7p1.129 pf7_9:916118c mal7p1.129 chr7_0046.glm_1|24oct01 vbc 2 3012 916118 917883 918027 919272 pf7 216 pf7_9:922207c|pf07_0102 pf7_9:922207c pf07_0102 chr7_0079.glm_1|24oct01 glm 1 1284 922207 923490 pf7 217 pf7_9:924331w|mal7p1.130 pf7_9:924331w mal7p1.130 chr7_0079.glm_2|24oct01 vbc 2 1005 924331 925149 925268 925453 pf7 218 pf7_9:926474w|pf07_0103 pf7_9:926474w pf07_0103 chr7_0079.glm_3|24oct01 glm 2 348 926474 926765 926889 926944 pf7 219 pf7_9:927495w|mal7p1.131 pf7_9:927495w mal7p1.131 chr7_0079.glm_3.1|24oct01 vbc 4 884 e x o n 1 splice cannot be predicted due to sequence instability 927495 927838 928068 928341 928568 928807 928934 928959 pf7 220 pf7_9:929267c|mal7p1.132 pf7_9:929267c mal7p1.132 chr7_0003.glm_1|240ct01 vbc 5 6129 929267 929341 929437 929520 929698 929789 929884 930042 930182 935900 pf7 221 pf7_9:937792c|mal7p1.133+mal7p1.134 pf7_9:937792c mal7p1.133+mal7p1.134 chr7_0003.glm_2+3|24oct01 vbc 5 10470 937792 938023 938173 938283 938391 938465 938636 945720 945966 948932 pf7 222 pf7_9:950535c|mal7p1.137 pf7_9:950535c mal7p1.137 chr7_0003.glm_5|24oct01 vbc 3 1272 950535 950606 950808 950971 951150 952185 pf7 223 pf7_9:955289w|pf07_0104 pf7_9:955289w pf07_0104 chr7_0010.glm_6|24oct01 vbc 1 5694 955289 960982 pf7 224 pf7_9:961757c|pf07_0105 pf7_9:961757c pf07_0105 chr7_0010.glm_5|24oct01 vbc 1 4044 961757 965800 pf7 225 pf7_9:968076w|mal7p1.138 pf7_9:968076w mal7p1.138 chr7_0010.glm_4|03oct02 sanger 2 4731 968076 972584 972843 973064 pf7 226 pf7_9:973804w|mal7p1.139 pf7_9:973804w mal7p1.139 chr7_0010.glm_3|03oct02 sanger/vbc /vbc 4 447 973804 973838 973953 974071 974183 974460 974547 974561 pf7 227 pf7_9:975026c|pf07_0106 pf7_9:975026c pf07_0106 chr7_0010.glm_2|24oct01 glm 2 2382 975026 977270 977442 977578 pf7 228 pf7_9:981838w|mal7p1.141 pf7_9:981838w mal7p1.141 chr7_0010.glm_1|03oct02 sanger/vbc /vbc 4 336 981838 981894 982223 982266 982494 982529 982680 982878 pf7 229 pf7_9:986584w|olim pf7_9:986584w olim mal6p1.143 18s r-rna vbc 1 1384 chr7 shares ribosomal r-rna operon with chr5 cf chrblob_4217 = chr5 986584 987967 pf7 230 pf7_10:988333w|bis pf7_10:988333w bis olim mal6p1.143=mal7_5.8s r-rna sanger 1 159 988333 988491 pf7 231 pf7_10:988704w|ter pf7_10:988704w ter olim mal6p1.143 28s r-rna vbc 1 3006 988704 991709 pf7 232 pf7_11:993618c|pre pf7_11:993618c pre pf07_0107 chr7_0071.glm_2|24oct01 vbc 1 473 frameshift near 993789 993790c [TA] 993618 994090 pf7 233 pf7_11:994915c|pf07_0107 pf7_11:994915c pf07_0107 chr7_0071.glm_1|24oct01 vbc 2 2412 994915 997125 997271 997471 pf7 234 pf7_11:1001171w|mal1p7.144 pf7_11:1001171w mal1p7.144 chr7_0101.glm_1|24oct01 vbc 3 2493 1001171 1001222 1001763 1004122 1004236 1004316 pf7 235 pf7_11:1005505w|mal7p1.145 pf7_11:1005505w mal7p1.145 chr7_0101.glm_2|24oct01 vbc 2 3993 1005505 1009187 1009404 1009713 pf7 236 pf7_11:1010180c|mal7p1.146 pf7_11:1010180c mal7p1.146 chr7_0101.glm_3|24oct01 vbc 5 14835 1010180 1010213 1010499 1023166 1023362 1025029 1025216 1025436 1025598 1025841 pf7 237 pf7_11:1027905c|mal7p1.147 pf7_11:1027905c mal7p1.147 chr7_0004.glm_1|03oct02 sanger 4 9552 1027905 1027960 1028123 1028291 1028470 1028538 1028669 1037926 pf7 238 pf7_11:1041828w|pf07_0108 pf7_11:1041828w pf07_0108 chr7_0041.glm_1|24oct01 glm 2 2067 1041828 1043481 1043691 1044103 pf7 239 pf7_11:1044652c|pf07_0109 pf7_11:1044652c pf07_0109 chr7_0041.glm_2|24oct01 glm 1 513 1044652 1045164 pf7 240 pf7_11:1046997w|pf07_0110 pf7_11:1046997w pf07_0110 chr7_0041.glm_2.1=gen_2=phat_3|24oct01 gen phat 1 1560 1046997 1048556 pf7 241 pf7_11:1048919c|pf07_0111 pf7_11:1048919c pf07_0111 chr7_0041.glm_3|24oct01 glm 1 3489 1048919 1052407 pf7 242 pf7_11:1053504c|mal7p1.149 pf7_11:1053504c mal7p1.149 chr7_0041.glm_4|24oct01 vbc 1 3201 1053504 1056704 pf7 243 pf7_11:1058097c|mal7p1.150 pf7_11:1058097c mal7p1.150 chr7_0095.glm_4|24oct01 vbc 1 1662 1058097 1059758 pf7 244 pf7_11:1061049c|mal7p1.151 pf7_11:1061049c mal7p1.151 chr7_0095.glm_3|24oct01 vbc 1 2121 1061049 1063169 pf7 245 pf7_11:1064059w|pf07_0112 pf7_11:1064059w pf07_0112 chr7_0095.glm_2|24oct01 vbc 3 771 1064059 1064072 1064315 1064396 1064506 1065180 pf7 246 pf7_11:1065804c|pf07_0113 pf7_11:1065804c pf07_0113 chr7_0095.glm_1|24oct01 glm 1 2124 1065804 1067927 pf7 247 pf7_11:1068790w|mal7p1.152 pf7_11:1068790w mal7p1.152 chrblob_4122.glm_1|24oct01 vbc 3 3090 1068790 1071738 1071870 1071976 1072133 1072166 pf7 248 pf7_11:1072635c|pf07_0114 pf7_11:1072635c pf07_0114 chr7_0099.glm_1|24oct01 glm 1 2871 1072635 1075505 pf7 249 pf7_11:1077293w|pf07_0115 pf7_11:1077293w pf07_0115 chr7_0099.glm_2|24oct01 vbc 1 5757 1077293 1083049 pf7 250 pf7_11:1085749w|pf07_0116 pf7_11:1085749w pf07_0116 chr7_0076.glm_1|24oct01 vbc 1 5772 1085749 1091520 pf7 251 pf7_11:1092527c|pf07_0117 pf7_11:1092527c pf07_0117 chr7_0096.glm_2|24oct01 vbc 2 990 1092527 1093365 1093487 1093637 pf7 252 pf7_11:1094964c|pf07_0118 pf7_11:1094964c pf07_0118 chr7_0091.glm_1+chr7_0096.glm_1|24oct01 pf7_11:1094964c pf07_0118 chr7_0091.glm_1+chr7_0096.glm_1|24oct01 1 16686 also chrblob_3717.glm_1 1094964 1111649 pf7 253 pf7_11:1113005w|mal7p1.153 pf7_11:1113005w mal7p1.153 chr7_0091.glm_2|24oct01 vbc 2 1659 1113005 1113065 1113268 1114865 pf7 254 pf7_11:1115189c|pf07_0119|03oct02 pf7_11:1115189c pf07_0119|03oct02 sanger 1 636 1115189 1115824 pf7 255 pf7_11:1116522w|mal7p1.154 pf7_11:1116522w mal7p1.154 chr7_0091.glm_3|24oct01 vbc 2 381 1116522 1116626 1116836 1117111 pf7 256 pf7_11:1117436c|bis pf7_11:1117436c bis mal7p1.154 chr7_0091.glm_4|24oct01 vbc 5 390 1117436 1117483 1117681 1117778 1117896 1118038 1118199 1118290 1118499 1118507 pf7 257 pf7_11:1119774w|mal7p1.155 pf7_11:1119774w mal7p1.155 chr7_0091.glm_5|24oct01 vbc 5 6489 1119774 1125579 1125753 1126005 1126130 1126453 1126596 1126677 1126798 1126821 pf7 258 pf7_11:1127377c|mal7p1.156 pf7_11:1127377c mal7p1.156 chr7_0081.glm_1+2|24oct01 vbc 4 2163 1127377 1128625 1128715 1128815 1128960 1129721 1130012 1130062 pf7 259 pf7_11:1131937w|mal7p1.157 pf7_11:1131937w mal7p1.157 chr7_0081.glm_3|24oct01 vbc 2 1401 1131937 1133304 1133496 1133528 pf7 260 pf7_11:1133620c|bis pf7_11:1133620c bis mal7p1.157 chr7_0037.glm_6|24oct01 glm 8 1479 1133620 1133673 1133956 1134005 1134139 1134202 1134302 1134394 1134488 1134553 1134648 1134692 1134796 1134849 1134968 1136020 pf7 261 pf7_11:1137210w|mal7p1.158|03oct02 pf7_11:1137210w mal7p1.158|03oct02 sanger 5 330 1137210 1137228 1137412 1137482 1137606 1137674 1137766 1137886 1138006 1138055 pf7 262 pf7_11:1139794w|pf07_0120 pf7_11:1139794w pf07_0120 chr7_0037.glm_3+5|24oct01 vbc 1 7742 frameshift near 1144271 1144270w [AT] 1139794 1147535 pf7 263 pf7_11:1148745w|mal7p1.159 pf7_11:1148745w mal7p1.159 chr7_0037.glm_2|24oct01 vbc 2 723 1148745 1148957 1149102 1149611 pf7 264 pf7_11:1150184c|pf07_0121 pf7_11:1150184c pf07_0121 chr7_0037.glm_1|24oct01 glm 1 2667 1150184 1152850 pf7 265 pf7_11:1154194w|pf07_0122 pf7_11:1154194w pf07_0122 chr7_0098.glm_5|24oct01 glm 1 1251 1154194 1155444 pf7 266 pf7_11:1156718w|pf07_0123 pf7_11:1156718w pf07_0123 chr7_0098.glm_4|24oct01 glm 1 2283 1156718 1159000 pf7 267 pf7_11:1160134w|mal7p1.160 pf7_11:1160134w mal7p1.160 chr7_0098.glm_2+3|24oct01 vbc 5 492 1160134 1160299 1160487 1160553 1160649 1160763 1160840 1160943 1161038 1161077 pf7 268 pf7_11:1161501c|pf07_0124 pf7_11:1161501c pf07_0124 chr7_0098.glm_1|24oct01 glm 2 2409 1161501 1162606 1162825 1164127 pf7 269 pf7_11:1165792w|mal7p1.161 pf7_11:1165792w mal7p1.161 vbc|03oct02 vbc |03oct02 vbc 1 294 1165792 1166085 pf7 270 pf7_11:1167257w|mal7p1.162 pf7_11:1167257w mal7p1.162 chr7_0011.glm_1|24oct01 vbc 2 15198 1167257 1182205 1182446 1182694 pf7 271 pf7_11:1183132c|mal7p1.163|03oct02 pf7_11:1183132c mal7p1.163|03oct02 sanger 2 351 1183132 1183352 1183540 1183669 pf7 272 pf7_11:1184260w|pf07_0125 pf7_11:1184260w pf07_0125 chr7_0011.glm_2|24oct01 glm 1 2607 1184260 1186866 pf7 273 pf7_11:1187404c|mal7p1.164 pf7_11:1187404c mal7p1.164 chr7_0011.glm_3|24oct01 vbc 4 2574 1187404 1188948 1189339 1190147 1190318 1190525 1190637 1190648 pf7 274 pf7_11:1195936c|mal7p1.165 pf7_11:1195936c mal7p1.165 chrblob_4087.glm_1|24oct01 vbc 8 669 1195936 1196112 1196252 1196318 1196433 1196525 1196618 1196712 1196853 1196942 1197057 1197134 1197310 1197374 1197480 1197483 pf7 275 pf7_11:1199006c|mal7p1.166 pf7_11:1199006c mal7p1.166 chr7_0065.vbc+chrblob_4087.glm_2|24oct01 vbc 1 4739 partial gene possible gel compression frameshifts by alignment 1203744c [AT] | 1203727 [A-C] | 1203715 [C] 1199006 1203744 pf7 276 pf7_12:1205379w|pf07_0126 pf7_12:1205379w pf07_0126 chr7_0072.glm_1|24oct01 glm 1 3996 1205379 1209374 pf7 277 pf7_12:1212267w|pf07_0127 pf7_12:1212267w pf07_0127 chrblob_4267.glm_1|24oct01 vbc 3 477 1212267 1212446 1212592 1212732 1212861 1213016 pf7 278 pf7_12:1213814c|mal7p1.167 pf7_12:1213814c mal7p1.167 chrblob_4065.gen_1+chrblob_4267.glm_2|24oct01 vbc 1 8322 1213814 1222135 pf7 279 pf7_12:1225978w|olim pf7_12:1225978w olim mal7p1.168 trna-val-gta vbc 1 73 plastid a 2050 trna-val-gta 1225978 1226050 pf7 280 pf7_12:1226930c|olim pf7_12:1226930c olim mal7p1.169 vbc trna-thr-aca vbc trna-thr-aca vbc 1 72 1226930 1227001 pf7 281 pf7_12:1229225w|mal1p7.170 pf7_12:1229225w mal1p7.170 chrblob_4188.glm_1|24oct01 glm stevor stevor 2 882 22 aa's 1229225 1229290 1229471 1230286 pf7 282 pf7_12:1233285w|mal7p1.171 pf7_12:1233285w mal7p1.171 chrblob_4271.glm_3|24oct01 vbc 2 6342 1233285 1233485 1233592 1239732 pf7 283 pf7_12:1246878w|mal7p1.172 pf7_12:1246878w mal7p1.172 chr6_019.glm_2|24oct01 glm 2 2673 1246878 1247081 1247241 1249709 pf7 284 pf7_12:1250761c|mal7p1.173 pf7_12:1250761c mal7p1.173 chr6_019.glm_1|24oct01 vbc 2 963 occam's razor 1250761 1251516 1251742 1251948 pf7 285 pf7_12:1257945w|mal7p1.174 pf7_12:1257945w mal7p1.174 chr7_0080.glm_1|24oct01 glm 2 960 1257945 1258049 1258214 1259068 pf7 286 pf7_12:1261642w|mal7p1.175 pf7_12:1261642w mal7p1.175 chr7_0080.glm_2+3|24oct01 glm 2 1641 tga @ 1262914 sequence error ? 1261642 1263201 1263322 1263402 pf7 287 pf7_12:1265975w|mal7p1.176 pf7_12:1265975w mal7p1.176 chr7_0019.glm_3|24oct01 glm 4 4509 1265975 1270238 1270364 1270442 1270544 1270626 1270767 1270849 pf7 288 pf7_12:1276081w|pf07_0129 pf7_12:1276081w pf07_0129 chr7_0019.glm_2|24oct01 glm 1 2436 1276081 1278516 pf7 289 pf7_12:1279983w|mal7p1.177 pf7_12:1279983w mal7p1.177 chr7_0060.glm_2|03oct02 sanger 2 591 1279983 1280051 1280159 1280680 pf7 290 pf7_12:1286538w|mal7p1.178 pf7_12:1286538w mal7p1.178 chr7_0018.glm_11|24oct01 glm 2 2028 1286538 1286594 1286719 1288689 pf7 291 pf7_12:1290330w|mal7p1.180 pf7_12:1290330w mal7p1.180 chr7_0018.glm_9+10|24oct01 vbc stevor stevor 2 925 frameshift near 1290735 1290735w [A] 1290330 1290395 1290552 1291410 pf7 292 pf7_12:1293555w|pf07_0130 pf7_12:1293555w pf07_0130 chr7_0018.glm_8|24oct01 vbc stevor stevor 2 891 1293555 1293623 1293725 1294546 pf7 293 pf7_12:1295741w|mal7p1.183=olim_pf07_0131 pf7_12:1295741w mal7p1.183=olim_pf07_0131 chr7_0018.glm_7|24oct01 var-c pseudogene pf7_12:1295741w mal7p1.183=olim_pf07_0131 chr7_0018.glm_7|24oct01 var-c pseudogene 1 1226 cf chr2, chr3, chr9; aligns to e n d s of chr2 pfb0020c and utr var-c = e x o n 2 of pfemp1 var 1295747w [A] | 1296180 [TT] | 1296350 [AcaataattaataatatcatgcatgatacaaaatactgctcaT] 1295741 1296966 pf7 294 pf7_12:1298631w|mal7p1.184=olim_pf07_0132 pf7_12:1298631w mal7p1.184=olim_pf07_0132 chr7_0018.glm_6|24oct01 glm rifin rifin 2 1101 1298631 1298684 1298917 1299963 pf7 295 pf7_12:1304357c|mal7p1.185=olim_pf07_0133 pf7_12:1304357c mal7p1.185=olim_pf07_0133 chr7_0018.glm_5|24oct01 vbc rifin rifin 2 1002 1304357 1305304 1305506 1305559 pf7 296 pf7_12:1307372c|olim pf7_12:1307372c olim pf07_0134 chr7_0018.glm_4|24oct01 glm stevor stevor 2 1149 1307372 1308451 1308534 1308602 pf7 297 pf7_12:1310543c|olim pf7_12:1310543c olim pf07_0135 chr7_0018.glm_3|03oct02 sanger rifin rifin 2 1104 alignment with rifins 1310543 1311592 1311845 1311898 pf7 298 pf7_12:1314347w|bis pf7_12:1314347w bis olim_pf07_0135 chr7_0018.glm_2|24oct01 vbc rifin pseudogene rifin pseudogene 2 422 subtelomeric copy chr 1, 2, 3, 4, 7, 9a, 9b, 10, 11, 12, 13, 14 copy of pf9_1:364030c 1314675w [TA] 1314347 1314400 1314618 1314985 pf7 299 pf7_12:1316700w|olim pf7_12:1316700w olim pf07_0136 chr7_0018.glm_1|24oct01 vbc stevor stevor 2 1029 1316700 1316768 1316884 1317843 pf7 300 pf7_12:1318880w|olim pf7_12:1318880w olim pf07_0137 chr1_2.glm_155|24oct01 glm rifin fragment rifin fragment 1 957 1318880 1319836 pf7 301 pf7_12:1322234w|olim pf7_12:1322234w olim pf07_0138 chr7_0073.glm_1|24oct01 glm rifin rifin 2 1020 1322234 1322287 1322518 1323483 pf7 302 pf7_12:1325389c|olim pf7_12:1325389c olim pf07_0139 chr7_0082.glm_1|24oct01 vbc pfemp1 var pfemp1 var 2 7788 1325389 1326831 1327691 1334035