record GenBank ID history name product exons length notes frameshift 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 pf12 1 pf12_1:16973w|pfL0005w pf12_1:16973w pfL0005w chr12_1.glm_8|24oct01 vbc pfemp1 var pfemp1 var 2 6537 16973 22048 23037 24497 pf12 2 pf12_1:26321c|pfL0010c pf12_1:26321c pfL0010c chr12_1.glm_9|24oct01 glm rifin rifin 2 1137 26321 27403 27634 27687 pf12 3 pf12_1:30078.2c|pfl0015c pf12_1:30078.2c pfl0015c chr12_1.glm_10|24oct01|alt2 vbc stevor stevor 2 1038 30078 31046 31193 31261 pf12 4 pf12_1:30078.1c|pfL0015c pf12_1:30078.1c pfL0015c chr12_1.glm_10|24oct01|alt1 vbc rifin rifin 2 1023 30078 31046 31208 31261 pf12 5 pf12_1:32703w|pfL0020w pf12_1:32703w pfL0020w chr12_1.glm_11+12|24oct01 vbc pfemp1 var pfemp1 var 2 8583 32703 40070 40726 41940 pf12 6 pf12_1:43800c|pfL0025c pf12_1:43800c pfL0025c chr12_1.glm_13|24oct01 glm rifin rifin 2 1110 alignment with chr13 contig 33 43800 44855 45053 45106 pf12 7 pf12_1:46788c|pfL0030c pf12_1:46788c pfL0030c chr12_1.glm_14+chrblob_3948+chrblob_3869+chrblob_3968|24oct01 vbc pfemp1 var pfemp1 var 2 9171 chr13 contig 33 46788 47954 48802 56805 pf12 8 pf12_1:57076c|bis pf12_1:57076c bis pfL0030c chr12_1.glm_15+chrblob_3968|24oct01 glm 1 402 chr13 2672689..2673090 ? sequence error 57076 57477 pf12 9 pf12_1:61556c|pfL0035c pf12_1:61556c pfL0035c chr12_1.glm_16|24oct01 glm 1 2781 61556 64336 pf12 10 pf12_1:68808c|pfL0040c pf12_1:68808c pfL0040c chr12_1.glm_17|24oct01 vbc 3 1704 68808 68885 69063 70613 70768 70842 pf12 11 pf12_1:73229c|pfL0045c pf12_1:73229c pfL0045c chr12_1.glm_18|24oct01 glm 2 1152 73229 74233 74376 74522 pf12 12 pf12_1:76846c|pfL0050c pf12_1:76846c pfL0050c chr12_1.glm_19|24oct01 glm 2 1962 76846 78732 78993 79067 pf12 13 pf12_1:81449c|pfL0055c pf12_1:81449c pfL0055c chr12_1.glm_20|24oct01 glm 2 2703 81449 83938 84239 84451 pf12 14 pf12_1:89934w|pfL0060w pf12_1:89934w pfL0060w chr12_1.glm_21|24oct01 vbc 2 891 read through tga @ 90747 89934 90125 90276 90974 pf12 15 pf12_1:92242w|pfL0065w pf12_1:92242w pfL0065w chr12_1.glm_22|24oct01 glm etramp qimr:ts 1 321 92242 92562 pf12 16 pf12_1:93581c|pfL0070c pf12_1:93581c pfL0070c chr12_1.glm_23|24oct01 vbc 3 3387 93581 96798 96975 97127 97362 97377 pf12 17 pf12_1:98978w|pfL0075w pf12_1:98978w pfL0075w chr12_1.glm_24|24oct01 glm 1 1494 98978 100471 pf12 18 pf12_1:101581c|pfL0080c pf12_1:101581c pfL0080c chr12_1.glm_25|24oct01 vbc 1 984 101581 102564 pf12 19 pf12_1:103861c|pfL0085cchr12_1.glm_26|24oct01 pf12_1:103861c pfL0085cchr12_1.glm_26|24oct01 vbc 1 744 103861 104604 pf12 20 pf12_1:105683c|pfL0090c pf12_1:105683c pfL0090c chr12_1.glm_27|24oct01 glm 1 657 105683 106339 pf12 21 pf12_1:107338c|pfL0095c pf12_1:107338c pfL0095c chr12_1.glm_28|24oct01 vbc 2 624 107338 107922 108164 108202 pf12 22 pf12_1:109247c|pfL0100c pf12_1:109247c pfL0100c chr12_1.glm_29|24oct01 vbc 7 2643 109247 109349 109502 109710 109814 109882 109979 110178 110379 110548 110732 110952 111088 112758 pf12 23 pf12_1:113787w|pfL0105w pf12_1:113787w pfL0105w chr12_1.glm_29.1=gen_9|24oct01 gen 7 1206 113787 113893 114020 114190 114311 114849 115173 115247 115347 115443 115572 115675 115811 115923 pf12 24 pf12_1:116475c|pfL0110c pf12_1:116475c pfL0110c chr12_1.glm_30|24oct01 glm 1 975 116475 117449 pf12 25 pf12_1:119402w|pfL0115w pf12_1:119402w pfL0115w chr12_1.glm_31-41|24oct01 vbc 34 17154 119402 119491 119599 119686 119809 123868 124003 124288 124396 124483 124640 124869 124988 125068 125182 125457 125551 125802 125931 126228 126360 126442 126528 126685 126801 126942 127144 127364 127454 127614 127755 127829 127944 128030 128156 128249 128400 128796 128917 129121 129209 129408 129500 130492 130685 130811 130993 131189 131300 131551 131706 131890 132050 132126 132299 132372 132590 133069 133258 136786 137247 139281 139436 139628 139920 141098 141239 141499 pf12 26 pf12_1:141642c|pfL0120c pf12_1:141642c pfL0120c chr12_1.glm_42|24oct01 vbc 8 669 141642 141740 141842 141911 142051 142154 142266 142360 142496 142601 142723 142787 142858 142912 143194 143268 pf12 27 pf12_1:144046c|pfL0125c pf12_1:144046c pfL0125c chr12_1.glm_43|24oct01 vbc 1 3239 frameshift near 146022 146024c [AA] 144046 147284 pf12 28 pf12_1:148107c|pfL0130c pf12_1:148107c pfL0130c chr12_1.glm_44+46|24oct01 vbc 7 6581 frameshift near 153555 153556c [TAt] 148107 148149 148241 148341 148466 148594 148706 148804 148983 149111 149246 149368 149520 155476 pf12 29 pf12_1:158230w|pfL0135w pf12_1:158230w pfL0135w chr12_1.glm_47|24oct01 vbc 6 1254 158230 159192 159339 159391 159503 159558 159702 159769 159910 159978 160087 160131 pf12 30 pf12_1:160713w|pfL0140w pf12_1:160713w pfL0140w chr12_1.glm_47.1|24oct01 vbc 3 291 160713 160826 160923 161039 161193 161252 pf12 31 pf12_1:162426c|pfL0145c pf12_1:162426c pfL0145c chr12_1.glm_48|24oct01 glm 1 294 162426 162719 pf12 32 pf12_1:167703w|pfL0150w pf12_1:167703w pfL0150w chr12_1.glm_49|24oct01 glm 1 3570 167703 171272 pf12 33 pf12_1:171504c|pfL0155c pf12_1:171504c pfL0155c chr12_1.glm_50|24oct01 vbc 2 513 171504 171614 171732 172133 pf12 34 pf12_1:172933w|pfL0160w pf12_1:172933w pfL0160w chr12_1.glm_51|24oct01 vbc 2 315 172933 173035 173147 173358 pf12 35 pf12_1:173872c|pfL0165c pf12_1:173872c pfL0165c chr12_1.glm_52|24oct01 glm 1 2979 173872 176850 pf12 36 pf12_1:178159w|pfL0170w pf12_1:178159w pfL0170w chr12_1.glm_53|24oct01 glm 1 3753 178159 181911 pf12 37 pf12_1:182295c|pfL0175c pf12_1:182295c pfL0175c chr12_1.glm_54|24oct01 glm 1 1671 182295 183965 pf12 38 pf12_1:184911w|pfL0180w pf12_1:184911w pfL0180w chr12_1.glm_55+56|24oct01 vbc 3 555 184911 185061 185229 185478 185612 185765 pf12 39 pf12_1:187143c|pfL0185c pf12_1:187143c pfL0185c chr12_1.glm_57|24oct01 stanford/vbc pf12_1:187143c pfL0185c chr12_1.glm_57|24oct01 stanford/vbc 3 1044 187143 188104 188296 188353 188816 188839 pf12 40 pf12_1:194141w|pfL-190w pf12_1:194141w pfL-190w chr12_1.glm_58+59|24oct01 vbc 5 444 194141 194164 194626 194729 194897 194966 195096 195243 195362 195459 pf12 41 pf12_1:197506w|pfL0195w pf12_1:197506w pfL0195w chr12_1.glm_60+61|24oct01 vbc 5 444 197506 197617 197806 197905 197993 198050 198212 198276 198410 198518 pf12 42 pf12_1:198967c|pfL0200c pf12_1:198967c pfL0200c chr12_1.glm_62|24oct01 glm 1 3270 198967 202236 pf12 43 pf12_1:202945w|pfL0205w pf12_1:202945w pfL0205w chr12_1.glm_63|24oct01 glm 1 1890 202945 204834 pf12 44 pf12_1:205488c|pfL0210c pf12_1:205488c pfL0210c chr12_1.glm_64|24oct01 glm 1 486 205488 205973 pf12 45 pf12_1:208366c|pfL0215c+pfL0220c pf12_1:208366c pfL0215c+pfL0220c chr12_1.glm_64.1|24oct01 vbc 12 1026 208366 208448 208538 208609 208700 208800 209125 209254 209446 209542 209658 209734 209835 209921 210026 210070 210163 210244 210387 210430 210522 210602 210764 210890 pf12 46 pf12_1:211514c|pfL0225c pf12_1:211514c pfL0225c chr12_1.glm_65|24oct01 vbc 1 840 211514 212353 pf12 47 pf12_1:213209w|pfL0230w pf12_1:213209w pfL0230w chr12_1.glm_66|24oct01 glm 1 981 213209 214189 pf12 48 pf12_1:214832w|pfL0235w pf12_1:214832w pfL0235w chr12_1.glm_66.1=gen_20|24oct01 vbc 5 363 214832 214932 215034 215111 215254 215307 215453 215517 215629 215693 pf12 49 pf12_1:217182w|pfL0245w pf12_1:217182w pfL0245w chr12_1.glm_66.2|24oct01 vbc 6 393 217182 217242 217401 217463 217582 217622 217702 217764 217966 218084 218192 218237 pf12 50 pf12_1:219578w|pfL0250w pf12_1:219578w pfL0250w chr12_1.glm_67|24oct01 glm 3 2346 219578 221442 221577 221744 221859 222171 pf12 51 pf12_1:222693c|pfL0255c pf12_1:222693c pfL0255c chr12_1.glm_68|24oct01 vbc 5 1746 222693 224124 224261 224362 224472 224558 224698 224729 224906 224998 pf12 52 pf12_1:226052c|pfL0260c pf12_1:226052c pfL0260c chr12_1.glm_69|24oct01 glm 1 1017 226052 227068 pf12 53 pf12_1:230461w|pfL0265w pf12_1:230461w pfL0265w chr12_1.glm_70|24oct01 vbc 1 945 230461 231405 pf12 54 pf12_1:232387c|pfL0270c pf12_1:232387c pfL0270c chr12_1.glm_71|24oct01 glm 1 3258 232387 235644 pf12 55 pf12_1:242808w|pfL0275w pf12_1:242808w pfL0275w chr12_1.glm_72|24oct01 glm 1 5358 242808 248165 pf12 56 pf12_1:249333c|pfL0280c pf12_1:249333c pfL0280c chr12_1.glm_73+74|24oct01 vbc 8 987 249333 249461 249572 249904 250119 250277 250396 250448 250576 250700 250877 250991 251159 251224 251390 251396 pf12 57 pf12_1:253152w|pfL0285w pf12_1:253152w pfL0285w chr12_1.glm_75|24oct01 glm 1 969 253152 254120 pf12 58 pf12_1:256364w|pfL0290w pf12_1:256364w pfL0290w chr12_1.glm_76|24oct01 glm 4 6855 256364 261994 262188 262347 262507 263412 263571 263728 pf12 59 pf12_1:264612c|pfL0295c pf12_1:264612c pfL0295c chr12_1.glm_78|24oct01 vbc 1 3249 264612 267860 pf12 60 pf12_1:270297c|pfL0300c pf12_1:270297c pfL0300c chr12_1.glm_79|24oct01 glm 1 915 270297 271211 pf12 61 pf12_1:272317c|pfL0305c pf12_1:272317c pfL0305c chr12_1.glm_80+81+82|24oct01 vbc 9 1335 272317 272434 272585 272753 272949 273026 273129 273346 273556 273688 273782 273932 274058 274185 274271 274507 274637 274739 pf12 62 pf12_1:275741c|pfL0310c pf12_1:275741c pfL0310c chr12_1.glm_83|24oct01 vbc 3 2955 275741 275909 276186 278890 279253 279333 pf12 63 pf12_1:281017c|pfL0315c pf12_1:281017c pfL0315c chr12_1.glm_84|24oct01 glm 1 8283 281017 289299 pf12 64 pf12_1:290728w|pfL0320w pf12_1:290728w pfL0320w chr12_1.glm_85|24oct01 glm 1 1146 290728 291873 pf12 65 pf12_1:292421w|pfL0325w pf12_1:292421w pfL0325w chr12_1.glm_86|24oct01 glm 1 1956 292421 294376 pf12 66 pf12_1:294994c|pfL0330c pf12_1:294994c pfL0330c chr12_1.glm_87|24oct01 glm 1 4353 294994 299346 pf12 67 pf12_1:301126c|pfL0335c pf12_1:301126c pfL0335c chr12_1.glm_88|24oct01 glm 1 1698 301126 302823 pf12 68 pf12_1:308211w|pfL0340w pf12_1:308211w pfL0340w chr12_1.glm_89|24oct01 glm 1 2184 308211 310394 pf12 69 pf12_1:310828w|pfL0345w pf12_1:310828w pfL0345w chr12_1.glm_90|24oct01 vbc 4 1959 310828 310929 311107 311169 311271 311471 311644 313236 pf12 70 pf12_1:313866c|pfL0350c pf12_1:313866c pfL0350c chr12_1.glm_91+92|24oct01 vbc 3 7839 313866 320873 320972 321024 321128 321905 pf12 71 pf12_1:324332c|pfL0355c pf12_1:324332c pfL0355c chr12_1.glm_93|24oct01 vbc 1 2523 324332 326854 pf12 72 pf12_1:329631c|pfL0360c pf12_1:329631c pfL0360c chr12_1.glm_94|24oct01 glm 1 8172 329631 337802 pf12 73 pf12_1:343413c|pfL0365c|03oct02 pf12_1:343413c pfL0365c|03oct02 vbc 5 333 343413 343445 343622 343666 343761 343812 343982 344055 344228 344356 pf12 74 pf12_1:345917w|pfL0370w pf12_1:345917w pfL0370w chr12_1.glm_95|24oct01 glm 2 1188 345917 346148 346279 347234 pf12 75 pf12_1:348269w|pfL0375w pf12_1:348269w pfL0375w chr12_1.glm_96|24oct01 vbc 3 549 348269 348331 348483 348783 348911 349095 pf12 76 pf12_1:349474c|pfL0380c pf12_1:349474c pfL0380c chr12_1.glm_97|24oct01 glm 1 1806 349474 351279 pf12 77 pf12_1:351845c|pfL0385c pf12_1:351845c pfL0385c chr12_1.glm_98|24oct01 vbc 9 1116 351845 352061 352158 352252 352340 352402 352537 352644 352771 352848 353002 353328 353415 353477 353685 353771 353924 354001 pf12 78 pf12_1:354535c|pfL0390c pf12_1:354535c pfL0390c chr12_1.glm_99|24oct01 glm 1 2907 354535 357441 pf12 79 pf12_1:357910.1c|pfL0395c pf12_1:357910.1c pfL0395c chr12_1.glm_100|24oct01|alt1 vbc 2 1185 357910 359055 359290 359328 pf12 80 pf12_1:357910.2c|pfL0395c|03oct02|alt2 pf12_1:357910.2c pfL0395c|03oct02|alt2 stanford pf12_1:357910.2c pfL0395c|03oct02|alt2 stanford 2 1164 357910 359055 359334 359351 pf12 81 pf12_1:359990w|pfL0400w pf12_1:359990w pfL0400w chr12_1.glm_101|24oct01 glm 2 384 359990 360205 360327 360494 pf12 82 pf12_1:361895w|pfL0405w pf12_1:361895w pfL0405w chr12_1.glm_102|24oct01 vbc 4 13410 361895 362090 362226 375141 375374 375530 375729 375869 pf12 83 pf12_1:376547w|pfL0410w pf12_1:376547w pfL0410w chr12_1.glm_103|24oct01 vbc 2 10815 376547 376809 376927 387478 pf12 84 pf12_1:388540w|pfL0415w pf12_1:388540w pfL0415w chr12_1.glm_104|24oct01 glm 2 474 388540 388905 389035 389142 pf12 85 pf12_1:390927w|pfL0420w pf12_1:390927w pfL0420w chr12_1.glm_105|03oct02 stanford pf12_1:390927w pfL0420w chr12_1.glm_105|03oct02 stanford 1 4695 390927 395621 pf12 86 pf12_1:395981c|pfL0425c pf12_1:395981c pfL0425c chr12_1.glm_106|24oct01 vbc 1 5259 395981 401239 pf12 87 pf12_1:402295w|pfL0430w pf12_1:402295w pfL0430w chr12_1.glm_107|24oct01 vbc 1 228 402295 402522 pf12 88 pf12_1:403345w|pfL0435w pf12_1:403345w pfL0435w chr12_1.glm_108|24oct01 glm 3 1197 403345 404430 404533 404613 404780 404809 pf12 89 pf12_1:405603c|pfL0440c pf12_1:405603c pfL0440c chr12_1.glm_109|24oct01 glm 1 3543 405603 409145 pf12 90 pf12_1:415398w|pfL0445w pf12_1:415398w pfL0445w chr12_1.glm_110|24oct01 glm 1 4329 415398 419726 pf12 91 pf12_1:421365c|pfL0450c pf12_1:421365c pfL0450c chr12_1.glm_111|24oct01 glm 2 504 421365 421643 421971 422195 pf12 92 pf12_1:423456c|pfL0455c pf12_1:423456c pfL0455c chr12_1.glm_112|24oct01 glm 1 2550 423456 426005 pf12 93 pf12_1:427266w|pfL0460w pf12_1:427266w pfL0460w chr12_1.glm_112.1=gen+39=phat_80|4oct01 gen 4 327 427266 427380 427480 427551 427715 427785 427904 427972 pf12 94 pf12_1:428489c|pfL0465c pf12_1:428489c pfL0465c chr12_1.glm_113|24oct01 vbc aj318336 aj318336 1 4386 428489 432874 pf12 95 pf12_1:436086w|pfL0470w pf12_1:436086w pfL0470w chr12_1.glm_114|24oct01 glm 1 2379 436086 438464 pf12 96 pf12_1:439708w|pfL0475w pf12_1:439708w pfL0475w chr12_1.glm_115|03oct02 stanford/vbc pf12_1:439708w pfL0475w chr12_1.glm_115|03oct02 stanford/vbc 3 2862 439708 439732 439846 441878 442049 442852 pf12 97 pf12_1:443674w|pfL0480w pf12_1:443674w pfL0480w chr12_1.glm_116|24oct01 glm 1 1308 443674 444981 pf12 98 pf12_1:445619.1w|pfL0485w pf12_1:445619.1w pfL0485w chr12_1.glm_117|24oct01|alt1 stanford pf12_1:445619.1w pfL0485w chr12_1.glm_117|24oct01|alt1 stanford 7 645 445619 445636 445751 446035 446203 446397 446515 446540 446640 446681 447044 447078 447219 447262 pf12 99 pf12_1:445619.2w|pfL0485w pf12_1:445619.2w pfL0485w chr12_1.glm_117|24oct01|alt2 vbc 6 639 445619 445636 445751 446035 446203 446397 446515 446540 446640 446681 446779 446851 pf12 100 pf12_1:447375c|pfL0490c pf12_1:447375c pfL0490c chr12_1.glm_118|24oct01 glm 1 570 447375 447944 pf12 101 pf12_1:448766c|pfL0495c pf12_1:448766c pfL0495c chr12_1.glm_119|24oct01 vbc 1 2568 448766 451333 pf12 102 pf12_1:452589w|pfL0500w pf12_1:452589w pfL0500w chr12_1.glm_120|24oct01 vbc 4 1134 452589 453165 453380 453787 454127 454188 454375 454461 pf12 103 pf12_1:455298c|pfL0505c pf12_1:455298c pfL0505c chr12_1.glm_121|24oct01 glm 1 933 455298 456230 pf12 104 pf12_1:458670c|pfL0510c pf12_1:458670c pfL0510c chr12_1.glm_122|24oct01 glm 1 3003 458670 461672 pf12 105 pf12_1:465108w|pfL0515w pf12_1:465108w pfL0515w chr12_1.glm_123|24oct01 glm 1 630 465108 465737 pf12 106 pf12_1:466595c|pfL0520c pf12_1:466595c pfL0520c chr12_1.glm_124|24oct01 glm 1 2706 466595 469300 pf12 107 pf12_1:470222w|pfL0525w pf12_1:470222w pfL0525w chr12_1.glm_125|24oct01 glm 1 1317 470222 471538 pf12 108 pf12_1:472253c|pfL0530c pf12_1:472253c pfL0530c chr12_1.glm_126|24oct01 vbc 1 3198 472253 475450 pf12 109 pf12_1:476570c|pfL0535c pf12_1:476570c pfL0535c chr12_1.glm_127|24oct01 vbc 3 1581 476570 476673 476771 476824 476941 478363 pf12 110 pf12_1:480586w|pf12_1:480586w pf12_1:480586w pfL0540w chr12_1.glm_128|24oct01 vbc 8 1326 480586 481382 481533 481650 481775 481873 481952 481993 482173 482232 482336 482386 482556 482615 482701 482799 pf12 111 pf12_1:484058w|pfL0545w pf12_1:484058w pfL0545w chr12_1.glm_129|24oct01 vbc 3 5535 484058 484180 484278 484485 484692 489895 pf12 112 pf12_1:490855w|pfL0550w pf12_1:490855w pfL0550w chr12_1.glm_129.1=phat_97|24oct01 vbc 1 696 490855 491550 pf12 113 pf12_1:491886c|pfL0555c pf12_1:491886c pfL0555c chr12_1.glm_129.2=gen_478|24oct01 vbc 1 5496 491886 497381 pf12 114 pf12_1:498518.1c|pfL0560c pf12_1:498518.1c pfL0560c chr12_1.glm_130.1|24oct01|alt1 vbc 4 3408 498518 498585 498684 498759 498871 502088 502178 502223 pf12 115 pf12_1:502085.2c|chr12_1.glm_130.2|24oct01|alt2 pf12_1:502085.2c chr12_1.glm_130.2|24oct01|alt2 vbc 2 54 502085 502088 502813 502862 pf12 116 pf12_1:505338w|pfL0565w pf12_1:505338w pfL0565w chr12_1.glm_132|24oct01 vbc 4 735 505338 505443 505679 505780 505952 506215 506394 506656 pf12 117 pf12_1:507802c|pfL0570c pf12_1:507802c pfL0570c chr12_1.glm_133|24oct01 glm 1 1164 507802 508965 pf12 118 pf12_1:510317w|pfL0575w pf12_1:510317w pfL0575w chr12_1.glm_134|24oct01 glm 2 8886 510317 519052 519282 519431 pf12 119 pf12_1:521681w|pfL0580w pf12_1:521681w pfL0580w chr12_1.glm_135|24oct01 glm 4 2277 521681 523632 523802 523946 524184 524293 524395 524464 pf12 120 pf12_1:526103w|pfL0585w pf12_1:526103w pfL0585w chr12_1.glm_136|24oct01 vbc 2 1146 526103 526130 526657 527774 pf12 121 pf12_1:528999c|pfL0590c pf12_1:528999c pfL0590c chr12_1.glm_137|24oct01 glm 1 3794 frameshift @ 530286 530236c [tTA] 528999 532792 pf12 122 pf12_1:534906c|pfL0595c pf12_1:534906c pfL0595c chr12_1.glm_138|24oct01 glm 3 618 534906 535055 535225 535395 535613 535909 pf12 123 pf12_1:536945w|pfL0600w pf12_1:536945w pfL0600w chr12_1.glm_139|24oct01 glm 1 1677 536945 538621 pf12 124 pf12_1:540719c|pfL0605c pf12_1:540719c pfL0605c chr12_1.glm_140|24oct01 glm 1 2208 540719 542926 pf12 125 pf12_1:543512w|pfL0610w pf12_1:543512w pfL0610w chr12_1.glm_141+142+143+144|24oct01 vbc 9 3756 543512 543605 543750 543851 543998 544213 544353 544632 544928 545253 545449 547650 547746 547980 548078 548218 548367 548526 pf12 126 pf12_1:549882w|pfL0615w pf12_1:549882w pfL0615w chr12_1.glm_145|24oct01 vbc 1 1023 549882 550904 pf12 127 pf12_1:552096c|pfL0620c pf12_1:552096c pfL0620c chr12_1.glm_146+chrblob_3059|24oct01 glm ay007373 ay007373 1 1752 552096 553847 pf12 128 pf12_1:558040c|pfL0625c pf12_1:558040c pfL0625c chr12_1.glm_147|24oct01 glm 1 4134 558040 562173 pf12 129 pf12_1:565959w|pfL0630w pf12_1:565959w pfL0630w chr12_1.glm_148|24oct01 glm 1 966 565959 566924 pf12 130 pf12_1:568562c|pfL0635c pf12_1:568562c pfL0635c chr12_1.glm_149|24oct01 glm 1 3267 568562 571828 pf12 131 pf12_1:576444w|bis pf12_1:576444w bis pfL0635w|03oct02 vbc nc-rna nc-rna 1 199 576444 576642 pf12 132 pf12_1:577522w|pfL0640w pf12_1:577522w pfL0640w chr12_1.glm_150|24oct01 glm 1 837 577522 578358 pf12 133 pf12_1:578463c|pfL0645c pf12_1:578463c pfL0645c chr12_1.glm_151|24oct01 glm 2 336 578463 578640 578753 578910 pf12 134 pf12_1:579588c|pfL0650c pf12_1:579588c pfL0650c chr12_1.glm_152|24oct01 glm 1 1731 579588 581318 pf12 135 pf12_1:583058w|pfL0655w pf12_1:583058w pfL0655w chr12_1.glm_153|24oct01 glm 2 2121 583058 584743 584882 585316 pf12 136 pf12_1:586802w|pfL0660w pf12_1:586802w pfL0660w chr12_1.glm_154|24oct01 glm 1 282 586802 587083 pf12 137 pf12_1:588121c|pfL0665c pf12_1:588121c pfL0665c chr12_1.glm_155|24oct01 vbc 3 438 588121 588253 588534 588679 588817 588975 pf12 138 pf12_1:590187c|pfL0670c pf12_1:590187c pfL0670c chr12_1.glm_156|24oct01 glm 1 2331 590187 592517 pf12 139 pf12_1:595160c|pfL0675c pf12_1:595160c pfL0675c chr12_1.glm_157|24oct01 vbc 2 3414 595160 595244 595441 598769 pf12 140 pf12_1:600947c|pfL0680c pf12_1:600947c pfL0680c chr12_1.glm_158|24oct01 glm 2 441 600947 601139 601310 601557 pf12 141 pf12_1:602421w|pfL0685w pf12_1:602421w pfL0685w chr12_1.glm_160+chrblob_3126|24oct01 glm 4 4122 chrblob_3126 bases 2336..2375 vary 602421 605260 605421 606518 606673 606745 606845 606955 pf12 142 pf12_1:607372c|pfL0690c pf12_1:607372c pfL0690c chr12_1.glm_161|24oct01 glm 2 537 607372 607482 607574 607999 pf12 143 pf12_1:608535c|pfL0695c pf12_1:608535c pfL0695c chr12_1.glm_162|24oct01 vbc 2 1302 608535 609003 609174 610006 pf12 144 pf12_1:610278c|bis pf12_1:610278c bis pfL0695c chr12_1.glm_163|24oct01 vbc 2 349 610278 610314 610451 610762 pf12 145 pf12_1:611885w|pfL0700w pf12_1:611885w pfL0700w chr12_1.glm_164|24oct01 vbc 5 534 611885 612107 612236 612385 612478 612506 612651 612740 612854 612895 pf12 146 pf12_1:613554c|pfL0705c pf12_1:613554c pfL0705c chr12_1.glm_165|24oct01 vbc 5 477 613554 613668 613797 613926 614023 614126 614268 614385 614558 614567 pf12 147 pf12_1:615629w|pfL0710w pf12_1:615629w pfL0710w chr12_1.glm_166|24oct01 glm 1 465 615629 616093 pf12 148 pf12_1:616775w|pfL0715w pf12_1:616775w pfL0715w chr12_1.glm_167|24oct01 vbc 3 330 frameshift in 24oct01 contig after 617374 616775 616903 617025 617075 617231 617380 pf12 149 pf12_1:618757w|pfL0720w pf12_1:618757w pfL0720w chr12_1.glm_168|24oct01 vbc 5 738 618757 618933 619036 619149 619352 619555 619705 619863 620021 620104 pf12 150 pf12_1:621118w|pfL0725w pf12_1:621118w pfL0725w chr12_1.glm_169|24oct01 glm 1 651 621118 621768 pf12 151 pf12_1:623113w|pfL0730w pf12_1:623113w pfL0730w chr12_1.glm_170|24oct01 vbc 2 2868 623113 625883 626170 626266 pf12 152 pf12_1:627354w|pfL0735w pf12_1:627354w pfL0735w chr12_1.glm_171|24oct01 glm 1 843 627354 628196 pf12 153 pf12_1:629002c|pfL0740c pf12_1:629002c pfL0740c chr12_1.glm_172|24oct01 glm 3 312 629002 629178 629311 629442 629658 629660 pf12 154 pf12_1:631154c|pfL0745c pf12_1:631154c pfL0745c chr12_1.glm_173|24oct01 vbc 1 1851 631154 633004 pf12 155 pf12_1:635028w|pfL0750w|03oct02 pf12_1:635028w pfL0750w|03oct02 stanford pf12_1:635028w pfL0750w|03oct02 stanford 1 423 635028 635450 pf12 156 pf12_1:635531c|pfL0755c pf12_1:635531c pfL0755c chr12_1.glm_174|24oct01 vbc 1 3342 635531 638872 pf12 157 pf12_1:639388w|pfL0760w pf12_1:639388w pfL0760w chr12_1.glm_174.1=gen_71|24oct01 gen 1 1101 639388 640488 pf12 158 pf12_1:641545w|pfL0765w pf12_1:641545w pfL0765w chr12_1.glm_175|24oct01 glm 1 1968 641545 643512 pf12 159 pf12_1:644532w|pfL0770w pf12_1:644532w pfL0770w chr12_1.glm_176|24oct01 vbc 1 1857 644532 646388 pf12 160 pf12_1:646972w|pfL0775w pf12_1:646972w pfL0775w chr12_1.glm_177|24oct01 glm 1 882 646972 647853 pf12 161 pf12_1:648882w|pfL0780w pf12_1:648882w pfL0780w chr12_1.glm_178|24oct01 vbc 5 1104 648882 648926 649098 649556 649653 649784 649962 650264 650381 650545 pf12 162 pf12_1:651391c|pfL0785c pf12_1:651391c pfL0785c chr12_1.glm_179|24oct01 glm 1 459 651391 651849 pf12 163 pf12_1:653663w|pfL0790w pf12_1:653663w pfL0790w chr12_1.glm_180|24oct01 glm 1 2766 653663 656428 pf12 164 pf12_1:657332c|pfL0795c pf12_1:657332c pfL0795c chr12_1.glm_181|24oct01 vbc 1 666 657332 657997 pf12 165 pf12_1:659731c|pfL0800c pf12_1:659731c pfL0800c chr12_1.glm_182|24oct01 glm 1 549 659731 660279 pf12 166 pf12_1:663054w|pfL0805w pf12_1:663054w pfL0805w chr12_1.glm_183|24oct01 glm 1 3222 663054 666275 pf12 167 pf12_1:666877w|olim pf12_1:666877w olim pfL0810w trna-pro-ccg vbc 1 72 666877 666948 pf12 168 pf12_1:670440w|pfL0815w pf12_1:670440w pfL0815w chr12_1.glm_185|24oct01 glm 1 2820 670440 673259 pf12 169 pf12_1:674342c|pfL0820c pf12_1:674342c pfL0820c chr12_1.glm_186|24oct01 glm 1 429 674342 674770 pf12 170 pf12_1:675449c|pfL0825c pf12_1:675449c pfL0825c chr12_1.glm_187|24oct01 vbc 8 993 ag splice site downstream; not spliced out: stanford 675449 675551 675759 675818 675934 676066 676169 676219 676421 676507 676630 676807 676965 676996 677221 677569 pf12 171 pf12_1:678595w|pfL0830w pf12_1:678595w pfL0830w chr12_1.glm_188|24oct01 glm 1 3360 678595 681954 pf12 172 pf12_1:682830w|pfL0835w pf12_1:682830w pfL0835w chr12_1.glm_189|24oct01 glm 1 2886 682830 685715 pf12 173 pf12_1:686300c|pfL0840c pf12_1:686300c pfL0840c chr12_1.glm_190|24oct01 glm 1 2565 686300 688864 pf12 174 pf12_1:693060w|pfL0845w pf12_1:693060w pfL0845w chr12_1.glm_192|24oct01 glm 1 645 693060 693704 pf12 175 pf12_1:695552w|pfL0850w pf12_1:695552w pfL0850w chr12_1.glm_192.1|24oct01 vbc 1 897 695552 696448 pf12 176 pf12_1:696888c|pfL0855c pf12_1:696888c pfL0855c chr12_1.glm_193|24oct01 glm 1 1563 696888 698450 pf12 177 pf12_1:698764c|pfL0860c pf12_1:698764c pfL0860c chr12_1.glm_194|24oct01 glm 1 243 698764 699006 pf12 178 pf12_1:700524w|pfL0865w pf12_1:700524w pfL0865w chr12_1.glm_195|24oct01 glm 3 1452 700524 700576 700715 700806 700898 702204 pf12 179 pf12_1:703888w|pfL0870w pf12_1:703888w pfL0870w chr12_1.glm_196|24oct01 vbc 1 1059 703888 704946 pf12 180 pf12_1:706220w|pfL0875w pf12_1:706220w pfL0875w chr12_1.glm_197|24oct01 vbc 5 1392 706220 707141 707275 707457 707628 707783 707969 708044 708135 708189 pf12 181 pf12_1:708929c|pfL0880c pf12_1:708929c pfL0880c chr12_1.glm_198|24oct01 vbc 3 6405 708929 708976 709175 709262 709390 715658 pf12 182 pf12_1:717948w|pfL0885w pf12_1:717948w pfL0885w chr12_1.glm_199|24oct01 vbc 1 1866 717948 719813 pf12 183 pf12_1:720879c|pfL0890c pf12_1:720879c pfL0890c chr12_1.glm_202|24oct01 vbc 10 1437 720879 720971 721091 721161 721332 721442 721580 721621 721716 721849 721983 722044 722168 722205 722297 722422 722548 722620 722755 723441 pf12 184 pf12_1:725834c|pfL0895c pf12_1:725834c pfL0895c chr12_1.glm_203+204|24oct01 vbc 5 3183 725834 725856 726030 726105 726212 726363 726520 728805 729182 729827 pf12 185 pf12_1:732167c|pfL0900c pf12_1:732167c pfL0900c chr12_1.glm_205+206|24oct01 vbc 7 1764 732167 732211 732314 732440 732572 732674 732833 732922 733079 733198 733323 734480 734823 734943 pf12 186 pf12_1:736328c|pfL0905c pf12_1:736328c pfL0905c chr12_1.glm_207|24oct01 glm 1 1491 736328 737818 pf12 187 pf12_1:738350c|pfL0910c+pfL0915c pf12_1:738350c pfL0910c+pfL0915c chr12_1.glm_208|24oct01 vbc 8 1050 738350 738723 738879 738947 739041 739100 739207 739255 739461 739517 739597 739639 739735 739960 740077 740248 pf12 188 pf12_1:740987c|pfL0920c pf12_1:740987c pfL0920c chr12_1.glm_209|24oct01 glm 1 2154 740987 743140 pf12 189 pf12_1:745995w|pfL0925w pf12_1:745995w pfL0925w chr12_1.glm_210+211|24oct01 vbc 1 8925 745995 754919 pf12 190 pf12_1:757642w|pfL0930w pf12_1:757642w pfL0930w chr12_1.glm_212|24oct01 glm 1 5994 757642 763635 pf12 191 pf12_1:763902w|bis pf12_1:763902w bis pfL0930w chr12_1.glm_212.1|24oct01 vbc stevor pseudogene stevor pseudogene 2 1029 763902 763970 764213 765172 pf12 192 pf12_1:766647c|pfL0935c pf12_1:766647c pfL0935c chr12_1.glm_213|24oct01 glm pfemp1 var pfemp1 var 2 6771 766647 767975 768749 774190 pf12 193 pf12_1:776071c|pfL0940c pf12_1:776071c pfL0940c chr12_1.glm_214+215+216|24oct01 vbc pfemp1 var fragment pfemp1 var fragment 1 3856 " frameshifts near 778788, 778063, 776506 and 776359 read through tga's at 778936 and 777723 " 778789c [GT] | 778064 [AA] | 776505 [T] | 776360 [AG] 776071 779926 pf12 194 pf12_1:784080w|pfL0945w pf12_1:784080w pfL0945w chr12_1.glm_217|24oct01 vbc 1 744 784080 784823 pf12 195 pf12_1:785564c|pfL0950c pf12_1:785564c pfL0950c chr12_1.glm_218|24oct01 vbc 4 4668 785564 785656 785804 785878 786016 790465 790617 790666 pf12 196 pf12_1:792870c|pfL0955c pf12_1:792870c pfL0955c chr12_1.glm_218.1|24oct01 vbc 1 573 792870 793442 pf12 197 pf12_1:796493w|pfL0960w pf12_1:796493w pfL0960w chr12_1.glm_219|24oct01 glm 1 684 796493 797176 pf12 198 pf12_1:798297c|pfL0965c pf12_1:798297c pfL0965c chr12_1.glm_220|24oct01 glm 1 1308 798297 799604 pf12 199 pf12_1:802537w|pfL0970w pf12_1:802537w pfL0970w chr12_1.glm_221|24oct01 glm 1 1857 802537 804393 pf12 200 pf12_1:807553w|pfL0975w pf12_1:807553w pfL0975w chr12_1.glm_222|24oct01 glm 5 8118 807553 807896 808032 815310 815424 815775 815904 816007 816159 816197 pf12 201 pf12_1:816902w|pfL0980w pf12_1:816902w pfL0980w chr12_1.glm_223|24oct01 glm 1 1560 816902 818461 pf12 202 pf12_1:818696c|pfL0985c pf12_1:818696c pfL0985c chr12_1.glm_223.1=gen_434|24oct01 gen 1 942 818696 819637 pf12 203 pf12_1:820579w|pfL0990w pf12_1:820579w pfL0990w chr12_1.glm_224+226|24oct01 vbc 5 924 820579 820680 820774 820807 821067 821418 821522 821771 822006 822191 pf12 204 pf12_1:822951c|pfL0995c pf12_1:822951c pfL0995c chr12_1.glm_227|24oct01 vbc 4 549 822951 823227 823579 823674 823863 823978 824138 824197 pf12 205 pf12_1:825690c|pfL1000c pf12_1:825690c pfL1000c chr12_1.glm_228|24oct01 vbc 1 2016 825690 827705 pf12 206 pf12_1:831245c|pfL1005c pf12_1:831245c pfL1005c chr12_1.glm_229|24oct01 glm 1 801 831245 832045 pf12 207 pf12_1:836905c|pfL1010c pf12_1:836905c pfL1010c chr12_1.glm_230|24oct01 glm 1 6990 836905 843894 pf12 208 pf12_1:847170.1w|pfL1015w pf12_1:847170.1w pfL1015w chr12_1.glm_232+233+234|24oct01|alt1 vbc 11 906 847170 847201 847339 847532 847628 847710 847884 847920 848018 848055 848176 848360 848469 848566 848672 848739 848842 848913 849001 849060 849138 849176 pf12 209 pf12_1:847430.2w|pfl1015w pf12_1:847430.2w pfl1015w chr12_1.glm_232+233+234|24oct01alt2 stanford pf12_1:847430.2w pfl1015w chr12_1.glm_232+233+234|24oct01alt2 stanford 10 783 847430 847532 847628 847710 847884 847920 848018 848055 848176 848360 848469 848566 848672 848739 848842 848913 849001 849060 849138 849176 pf12 210 pf12_1:849833w|pfL1020w pf12_1:849833w pfL1020w chr12_1.glm_235|24oct01 vbc 4 321 849833 849860 850066 850181 850295 850395 850570 850645 pf12 211 pf12_1:851005c|pfL1025c pf12_1:851005c pfL1025c chr12_1.glm_236+237+238|24oct01 vbc 9 2136 851005 851713 851893 851963 852115 852188 852346 852479 852733 852808 853092 853767 853964 854043 854260 854353 854511 854732 pf12 212 pf12_1:857090w|pfL1030w pf12_1:857090w pfL1030w chr12_1.glm_239|24oct01 glm 1 1575 857090 858664 pf12 213 pf12_1:860162w|pfL1035w pf12_1:860162w pfL1035w chr12_1.glm_240|24oct01 glm 1 2622 860162 862783 pf12 214 pf12_1:863803w|pfL1040w pf12_1:863803w pfL1040w chr12_1.glm_241|24oct01 glm 1 1377 863803 865179 pf12 215 pf12_1:865887w|pfL1045w pf12_1:865887w pfL1045w chr12_1.glm_242|24oct01 vbc 3 2745 865887 868366 868481 868676 868827 868895 pf12 216 pf12_1:869252w|pfL1050w pf12_1:869252w pfL1050w chr12_1.glm_243|24oct01 glm 1 2109 869252 871360 pf12 217 pf12_1:872352c|pfL1055c pf12_1:872352c pfL1055c chr12_1.glm_244|24oct01 vbc 1 2580 872352 874931 pf12 218 pf12_1:876907c|pfL1060c pf12_1:876907c pfL1060c chr12_1.glm_245|24oct01 glm 1 1710 876907 878616 pf12 219 pf12_1:879621c|pfL1065c pf12_1:879621c pfL1065c chr12_1.glm_246|24oct01 vbc 1 1557 879621 881177 pf12 220 pf12_1:883558c|pfL1070c pf12_1:883558c pfL1070c chr12_1.glm_247|24oct01 glm 1 2466 883558 886023 pf12 221 pf12_1:890572w|pfL1075w pf12_1:890572w pfL1075w chr12_1.glm_248|24oct01 glm 1 7677 890572 898248 pf12 222 pf12_1:899189c|pfL1080c pf12_1:899189c pfL1080c chr12_1.glm_249|24oct01 vbc 7 744 899189 899433 899543 899609 899681 899732 899853 899929 900043 900128 900270 900368 900950 901067 pf12 223 pf12_1:907194w|pfL1085w pf12_1:907194w pfL1085w chr12_1.glm_250|24oct01 glm 1 7299 907194 914492 pf12 224 pf12_1:918713w|pfL1090w pf12_1:918713w pfL1090w chr12_1.glm_252|24oct01 glm 1 615 918713 919327 pf12 225 pf12_1:920781c|pfL1095c pf12_1:920781c pfL1095c chr12_1.glm_253|24oct01 vbc 7 792 920781 920918 921049 921102 921253 921366 921589 921797 921891 921975 922138 922203 922282 922407 pf12 226 pf12_1:923518w|pfL1100w pf12_1:923518w pfL1100w chr12_1.glm_254|24oct01 glm 2 1506 923518 924914 925081 925189 pf12 227 pf12_1:925366c|pfL1105c pf12_1:925366c pfL1105c pfL1105c|03oct02 stanford pf12_1:925366c pfL1105c pfL1105c|03oct02 stanford 4 405 925366 925407 925504 925700 925833 925875 926118 926240 pf12 228 pf12_1:927816.1c|pfL1110c pf12_1:927816.1c pfL1110c chr12_1.glm_255|24oct01|alt1 vbc 3 1326 927816 928816 929026 929330 929963 929982 pf12 229 pf12_1:929287.2c|chr12_1.glm_255|24oct01|alt2 pf12_1:929287.2c chr12_1.glm_255|24oct01|alt2 vbc 2 57 929287 929330 929963 929975 pf12 230 pf12_1:929304.3c|chr12_1.glm_255|24oct01|alt3 pf12_1:927816.3c chr12_1.glm_255|24oct01|alt3 vbc 2 30 929304 929330 929963 929965 pf12 231 pf12_1:932908w|pfL1115w pf12_1:932908w pfL1115w chr12_1.glm_256|24oct01 glm 1 1365 932908 934272 pf12 232 pf12_1:934962c|pfL1120c pf12_1:934962c pfL1120c chr12_1.glm_257|24oct01 glm 1 3669 934962 938630 pf12 233 pf12_1:941116w|pfL1125w pf12_1:941116w pfL1125w chr12_1.glm_257.1=gen_103=phat_194|03oct02 stanford pf12_1:941116w pfL1125w chr12_1.glm_257.1=gen_103=phat_194|03oct02 stanford 6 4857 941116 944793 944940 945242 945440 945793 945917 946224 946383 946470 946611 946736 pf12 234 pf12_1:946855c|pfL1130c pf12_1:946855c pfL1130c chr12_1.glm_258|24oct01 stanford/vbc pf12_1:946855c pfL1130c chr12_1.glm_258|24oct01 stanford/vbc 4 13518 946855 946896 947047 947126 947391 947505 947680 960960 pf12 235 pf12_1:962622c|pfL1135c pf12_1:962622c pfL1135c chr12_1.glm_259+260|24oct01 vbc 2 4683 962622 966768 966947 967482 pf12 236 pf12_1:968971w|pfL1140w pf12_1:968971w pfL1140w chr12_1.glm_261|24oct01 vbc 2 822 968971 969672 969945 970064 pf12 237 pf12_1:971259w|pfL1145w pf12_1:971259w pfL1145w chr12_1.glm_262|24oct01 glm 1 927 971259 972185 pf12 238 pf12_1:972701c|pfL1150c pf12_1:972701c pfL1150c chr12_1.glm_263|24oct01 glm 1 684 972701 973384 pf12 239 pf12_1:974363w|pfL1155w pf12_1:974363w pfL1155w chr12_1.glm_264|24oct01 glm 1 1170 974363 975532 pf12 240 pf12_1:976811c|pfL1160c pf12_1:976811c pfL1160c chr12_1.glm_265+266|24oct01 vbc 4 579 976811 976917 977041 977223 977363 977528 977758 977880 pf12 241 pf12_1:981283w|pfL1165w pf12_1:981283w pfL1165w chr12_1.glm_268|24oct01 vbc 5 2469 may initiate at 981292: stanford 981283 983361 983664 983834 984002 984109 984250 984296 984403 984466 pf12 242 pf12_1:988619w|pfL1170w pf12_1:988619w pfL1170w chr12_1.glm_269|24oct01 glm 1 2628 988619 991246 pf12 243 pf12_1:994246w|pfL1175w pf12_1:994246w pfL1175w chr12_1.glm_270+271|24oct01 vbc 2 1788 994246 995345 995742 996429 pf12 244 pf12_1:998344w|pfL1180w pf12_1:998344w pfL1180w chr12_1.glm_272+273|24oct01 vbc 2 822 998344 998601 998703 999266 pf12 245 pf12_1:1000670c|pfL1185c pf12_1:1000670c pfL1185c chr12_1.glm_274|03oct02 stanford/vbc pf12_1:1000670c pfL1185c chr12_1.glm_274|03oct02 stanford/vbc 6 681 1000670 1000786 1000926 1000972 1001116 1001162 1001218 1001304 1001447 1001720 1001828 1001936 pf12 246 pf12_1:1003192c|pfL1190c pf12_1:1003192c pfL1190c chr12_1.glm_275|24oct01 glm 1 4386 1003192 1007577 pf12 247 pf12_1:1009280w|pfL1195w pf12_1:1009280w pfL1195w chr12_1.glm_276|24oct01 vbc 1 963 1009280 1010242 pf12 248 pf12_1:1010823c|pfL1200c pf12_1:1010823c pfL1200c chr12_1.glm_276.1=gen_413=phat_208a|24oct01 gen 2 321 1010823 1011087 1011278 1011333 pf12 249 pf12_1:1012301c|pfL1205c pf12_1:1012301c pfL1205c chr12_1.glm_277+278|24oct01 vbc 3 5187 1012301 1012391 1012549 1014190 1014386 1017839 pf12 250 pf12_1:1018497w|pfL1210w pf12_1:1018497w pfL1210w chr12_1.glm_279|03oct02 stanford pf12_1:1018497w pfL1210w chr12_1.glm_279|03oct02 stanford 4 5091 1018497 1018771 1018921 1019956 1020145 1023836 1023912 1023999 pf12 251 pf12_1:1024446c|pfL1215c pf12_1:1024446c pfL1215c chr12_1.glm_280|24oct01 glm 1 3564 1024446 1028009 pf12 252 pf12_1:1029853w|pfL1220w pf12_1:1029853w pfL1220w chr12_1.glm_281|24oct01 vbc 2 995 frameshift @ 1031382; (a)26 follows * codon 1031329w [AAt] 1029853 1030682 1031169 1031333 pf12 253 pf12_1:1031816c|pfL1225c pf12_1:1031816c pfL1225c chr12_1.glm_282|24oct01 glm 1 741 1031816 1032556 pf12 254 pf12_1:1033542w|pfL1230w pf12_1:1033542w pfL1230w chr12_1.glm_283|24oct01 glm 2 1332 1033542 1034626 1034857 1035103 pf12 255 pf12_1:1035252c|pfL1235c pf12_1:1035252c pfL1235c chr12_1.glm_284|24oct01 vbc 5 2345 1037434c [aCG] 1035252 1035307 1035408 1035477 1035562 1035722 1035946 1036065 1036208 1038145 pf12 256 pf12_1:1039400c|pfL1240c pf12_1:1039400c pfL1240c chr12_1.glm_285|24oct01 glm 1 4506 1039400 1043905 pf12 257 pf12_1:1045985w|pfL1245w pf12_1:1045985w pfL1245w chr12_1.glm_286|24oct01 vbc 3 3423 1045985 1046008 1046269 1049395 1049550 1049821 pf12 258 pf12_1:1050270c|pfL1250c pf12_1:1050270c pfL1250c chr12_1.glm_287|24oct01 glm 1 2121 1050270 1052390 pf12 259 pf12_1:1053286c|pfL1255c pf12_1:1053286c pfL1255c chr12_1.glm_288|24oct01 vbc 2 2727 1053286 1053573 1053834 1056272 pf12 260 pf12_1:1058192w|pfL1260w pf12_1:1058192w pfL1260w chr12_1.glm_288.1=gen_116=phat_219|24oct01 gen phat 1 951 1058192 1059142 pf12 261 pf12_1:1059708c|pfL1265c pf12_1:1059708c pfL1265c chr12_1.glm_289|24oct01 glm 1 1752 1059708 1061459 pf12 262 pf12_1:1065786w|pfL1270w pf12_1:1065786w pfL1270w chr12_1.glm_290|24oct01 glm 1 888 1065786 1066673 pf12 263 pf12_1:1067460c|pfL1275c pf12_1:1067460c pfL1275c chr12_1.glm_291+292+293|24oct01 vbc 5 2571 1067460 1067498 1067652 1067697 1067840 1069038 1069516 1070562 1071060 1071299 pf12 264 pf12_1:1072449w|pfL1280w pf12_1:1072449w pfL1280w chr12_1.glm_294|24oct01 vbc 1 4518 1072449 1076966 pf12 265 pf12_1:1077858c|pfL1285c pf12_1:1077858c pfL1285c chr12_1.glm_295+296|24oct01 vbc 2 795 1077858 1078473 1078588 1078766 pf12 266 pf12_1:1081188w|pfL1290w pf12_1:1081188w pfL1290w chr12_1.glm_297|24oct01 glm 1 1911 1081188 1083098 pf12 267 pf12_1:1085377w|pfL1295w pf12_1:1085377w pfL1295w chr12_1.glm_298+299|24oct01 vbc 5 1146 1085377 1085457 1085848 1086573 1086675 1086785 1086899 1087054 1087183 1087254 pf12 268 pf12_1:1088526c|pfL1300c pf12_1:1088526c pfL1300c chr12_1.glm_300|24oct01 glm 1 1488 1088526 1090013 pf12 269 pf12_1:1092150c|pfL1305c pf12_1:1092150c pfL1305c chr12_1.glm_301|24oct01 vbc 1 492 1092150 1092641 pf12 270 pf12_1:1093533c|pfL1310c pf12_1:1093533c pfL1310c chr12_1.glm_302|24oct01 glm 1 2229 1093533 1095761 pf12 271 pf12_1:1098119w|pfL1315w pf12_1:1098119w pfL1315w chr12_1.glm_303|24oct01 glm 1 5940 1098119 1104058 pf12 272 pf12_1:1105241w|pfL1320w pf12_1:1105241w pfL1320w chr12_1.glm_304|24oct01 glm 1 3489 1105241 1108729 pf12 273 pf12_1:1109141c|pfL1325c pf12_1:1109141c pfL1325c chr12_1.glm_305|24oct01 vbc 1 3519 1109141 1112659 pf12 274 pf12_1:1114015c|pfL1330c pf12_1:1114015c pfL1330c chr12_1.glm_306|24oct01 glm 2 6912 1114015 1114757 1114915 1121083 pf12 275 pf12_1:1124778w|pfL1335w pf12_1:1124778w pfL1335w chr12_1.glm_307+chrblob_2627.glm_1|24oct01 vbc 2 3348 1124778 1127908 1128114 1128330 pf12 276 pf12_1:1128929c|pfL1340c pf12_1:1128929c pfL1340c chr12_1.glm_308|24oct01 vbc 3 2316 1128929 1129702 1129860 1130851 1131127 1131676 pf12 277 pf12_1:1134360c|pfL1345c pf12_1:1134360c pfL1345c chr12_1.glm_309|24oct01 glm 1 3279 1134360 1137638 pf12 278 pf12_1:1138598w|pfL1350w pf12_1:1138598w pfL1350w chr12_1.glm_310|24oct01 glm 1 1695 1138598 1140292 pf12 279 pf12_1:1140933w|pfL1355w pf12_1:1140933w pfL1355w chr12_1.glm_311|24oct01 glm 1 444 1140933 1141376 pf12 280 pf12_1:1141573c|pfL1360c pf12_1:1141573c pfL1360c chr12_1.glm_312+313|24oct01 vbc 3 1344 1141573 1142189 1142291 1142744 1142912 1143184 pf12 281 pf12_1:1143650w|pfL1365w pf12_1:1143650w pfL1365w chr12_1.glm_314|24oct01 glm 1 2457 1143650 1146106 pf12 282 pf12_1:1148101w|pfL1370w pf12_1:1148101w pfL1370w chr12_1.glm_315|24oct01 glm 2 3174 1148101 1151045 1151223 1151451 pf12 283 pf12_1:1153342w|pfL1375w pf12_1:1153342w pfL1375w chr12_1.glm_316|24oct01 glm 1 4206 1153342 1157547 pf12 284 pf12_1:1158544w|pfL1380w pf12_1:1158544w pfL1380w chr12_1.glm_317|24oct01 vbc 3 1230 1158544 1158572 1158699 1158789 1158943 1160052 pf12 285 pf12_1:1160719c|pfL1385c pf12_1:1160719c pfL1385c chr12_1.glm_318|24oct01 glm 1 2232 1160719 1162950 pf12 286 pf12_1:1165498w|pfL1390w pf12_1:1165498w pfL1390w chr12_1.glm_320+chrblob_3029.glm_1|24oct01 glm 2 3408 1165498 1168687 1168921 1169138 pf12 287 pf12_1:1169547c|pfL1395c pf12_1:1169547c pfL1395c chr12_1.glm_321|24oct01 vbc 1 9630 1169547 1179176 pf12 288 pf12_1:1180659c|pfL1400c pf12_1:1180659c pfL1400c chr12_1.glm_322+323|24oct01 vbc 21 2283 1180659 1180749 1180910 1180977 1181090 1181221 1181370 1181446 1181539 1181607 1181758 1181842 1181958 1182119 1182244 1182264 1182399 1182467 1182580 1182705 1182782 1182886 1183029 1183092 1183200 1183410 1183561 1183621 1183722 1183919 1184016 1184156 1184342 1184401 1184506 1184553 1184665 1184752 1184888 1185045 1185224 1185472 pf12 289 pf12_1:1186404w|pfL1405w pf12_1:1186404w pfL1405w chr12_1.glm_324|24oct01 vbc 1 5505 1186404 1191908 pf12 290 pf12_1:1192877c|pfL1410c pf12_1:1192877c pfL1410c chr12_1.glm_325|24oct01 vbc 1 6324 1192877 1199200 pf12 291 pf12_1:1204980w|pfL1415w pf12_1:1204980w pfL1415w chr12_1.glm_326.1=gen_133|24oct01 vbc 1 2973 1204980 1207952 pf12 292 pf12_1:1208901w|pfL1420w pf12_1:1208901w pfL1420w chr12_1.glm_327|24oct01 glm 2 351 1208901 1208979 1209260 1209531 pf12 293 pf12_1:1211777w|pfL1425w pf12_1:1211777w pfL1425w chr12_1.glm_328|24oct01 glm 2 1629 1211777 1211863 1212011 1213552 pf12 294 pf12_1:1214032c|pfL1430c pf12_1:1214032c pfL1430c chr12_1.glm_329|24oct01 glm 2 3492 1214032 1214128 1214310 1217704 pf12 295 pf12_1:1219125c|pfL1435c pf12_1:1219125c pfL1435c chr12_1.glm_330|24oct01 vbc af376800 af376800 4 6891 1219125 1219211 1219286 1219421 1219623 1226043 1226208 1226454 pf12 296 pf12_1:1228052c|pfL1440c pf12_1:1228052c pfL1440c chr12_1.glm_331+332|24oct01 vbc 24 2073 downstream ag site 1228052 1228366 1228455 1228538 1228765 1228842 1228925 1229068 1229182 1229238 1229334 1229391 1229488 1229534 1229639 1229666 1229781 1229821 1229978 1230074 1230226 1230314 1230500 1230558 1230661 1230733 1230890 1230988 1231099 1231169 1231258 1231381 1231539 1231607 1231683 1231739 1231842 1231906 1232046 1232094 1232189 1232312 1232446 1232549 1232712 1232816 1232959 1232994 pf12 297 pf12_1:1233685w|pfL1445w pf12_1:1233685w pfL1445w chr12_1.glm_333+334|24oct01 vbc 11 6006 1233685 1233923 1234039 1234216 1234380 1234518 1234704 1234779 1234894 1235003 1235184 1235349 1235554 1235638 1235756 1235946 1236103 1236230 1236365 1240959 1241178 1241276 pf12 298 pf12_1:1242014c|pfL1450c pf12_1:1242014c pfL1450c chr12_1.glm_335|24oct01 vbc 1 1575 1242014 1243588 pf12 299 pf12_1:1245524w|pfL1455w pf12_1:1245524w pfL1455w chr12_1.glm_336|24oct01 vbc 2 3350 frameshift near 1248511 1248510w [AA] 1245524 1245623 1245910 1249159 pf12 300 pf12_1:1249757c|pfL1460c pf12_1:1249757c pfL1460c chr12_1.glm_337|24oct01 vbc 2 777 1249757 1249912 1250026 1250646 pf12 301 pf12_1:1251903c|pfL1465c pf12_1:1251903c pfL1465c chr12_1.glm_338|24oct01 vbc 5 624 1251903 1252213 1252343 1252469 1252580 1252618 1252807 1252890 1252994 1253056 pf12 302 pf12_1:1253962c|pfL1470c pf12_1:1253962c pfL1470c chr12_1.glm_340|24oct01 glm 1 1509 1253962 1255470 pf12 303 pf12_1:1256679w|pfL1475w pf12_1:1256679w pfL1475w chr12_1.glm_341|24oct01 glm 2 1131 1256679 1256914 1257199 1258093 pf12 304 pf12_1:1259609w|pfL1480w pf12_1:1259609w pfL1480w chr12_1.glm_342|24oct01 glm 1 2469 1259609 1262077 pf12 305 pf12_1:1263650w|pfL1485w pf12_1:1263650w pfL1485w chr12_1.glm_343+344|03oct02 stanford pf12_1:1263650w pfL1485w chr12_1.glm_343+344|03oct02 stanford 2 1755 " 1263739, not 1263728 as in genbank nc_004316 feature table " 1263650 1263739 1263918 1265582 pf12 306 pf12_1:1267357w|pfL1490w pf12_1:1267357w pfL1490w chr12_1.glm_345|24oct01 glm 1 2799 1267357 1270155 pf12 307 pf12_1:1271129w|pfL1495w pf12_1:1271129w pfL1495w chr12_1.glm_346|24oct01 vbc 7 3027 1271129 1271143 1271243 1271302 1271433 1271555 1271640 1271847 1271948 1272054 1272165 1272477 1272644 1274844 pf12 308 pf12_1:1276246w|pfL1500w pf12_1:1276246w pfL1500w chr12_1.glm_347|24oct01 vbc 7 642 1276246 1276294 1276426 1276564 1276739 1276822 1276962 1277163 1277276 1277344 1277480 1277531 1277677 1277723 pf12 309 pf12_1:1278449c|pfL1505c pf12_1:1278449c pfL1505c chr12_1.glm_348|24oct01 glm 1 1152 1278449 1279600 pf12 310 pf12_1:1286487c|pfL1510c pf12_1:1286487c pfL1510c chr12_1.glm_349|24oct01 glm 1 2859 1286487 1289345 pf12 311 pf12_1:1290674c|pfL1515c pf12_1:1290674c pfL1515c chr12_1.glm_350|24oct01 vbc 3 5835 1290674 1290871 1291096 1296560 1296887 1297058 pf12 312 pf12_1:1299589w|pfL1520w pf12_1:1299589w pfL1520w chr12_1.glm_351|24oct01 glm 1 429 1299589 1300017 pf12 313 pf12_1:1301088c|pfL1525c pf12_1:1301088c pfL1525c chr12_1.glm_352|24oct01 glm 1 3507 1301088 1304594 pf12 314 pf12_1:1314686w|pfL1530w pf12_1:1314686w pfL1530w chr12_1.glm_353|24oct01 glm 1 5475 1314686 1320160 pf12 315 pf12_1:1321970w|pfL1535w pf12_1:1321970w pfL1535w chr12_1.glm_354|24oct01 vbc 1 3261 1321970 1325230 pf12 316 pf12_1:1325474c|pfL1540c pf12_1:1325474c pfL1540c chr12_1.glm_355|24oct01 vbc 3 1641 1325474 1325563 1325749 1327277 1327544 1327565 pf12 317 pf12_1:1328301c|pfL1545c pf12_1:1328301c pfL1545c chr12_1.glm_356+357.1|24oct01 vbc 2 2151 1328301 1329440 1330345 1331355 pf12 318 pf12_1:1333124w|pfL1550w pf12_1:1333124w pfL1550w chr12_1.glm_358|24oct01 glm 2 1539 1333124 1333194 1333419 1334886 pf12 319 pf12_1:1336261w|pfL1555w pf12_1:1336261w pfL1555w chr12_1.glm_359|24oct01 vbc 3 474 1336261 1336414 1336594 1336823 1337113 1337202 pf12 320 pf12_1:1337699c|pfL1560c pf12_1:1337699c pfL1560c chr12_1.glm_360|24oct01 glm 1 1107 1337699 1338805 pf12 321 pf12_1:1339834c|pfL1565c pf12_1:1339834c pfL1565c chr12_1.glm_361+362|24oct01 vbc 2 3215 frameshift @ 1340204 1340204c [AaT] 1339834 1342771 1343026 1343302 pf12 322 pf12_1:1344251w|pfL1570w pf12_1:1344251w pfL1570w chr12_1.glm_363|24oct01 vbc 1 1089 1344251 1345339 pf12 323 pf12_1:1346040w|pfL1575w pf12_1:1346040w pfL1575w chr12_1.glm_364|24oct01 vbc 5 594 1346040 1346291 1346388 1346486 1346638 1346741 1346873 1346928 1347045 1347127 pf12 324 pf12_1:1347618w|pfL1580w pf12_1:1347618w pfL1580w chr12_1.glm_365+366|24oct01 vbc 10 1800 1347618 1347677 1347820 1347874 1347970 1348041 1348159 1348243 1348512 1348599 1348672 1348753 1348841 1348924 1349006 1349110 1349216 1349280 1349398 1350501 pf12 325 pf12_1:1350634c|bis pf12_1:1350634c bis pfL1580c|03oct02 vbc 4 378 1350634 1350672 1350786 1350878 1350976 1351216 1351440 1351444 pf12 326 pf12_1:1351600c|pfL1585c pf12_1:1351600c pfL1585c chr12_1.glm_367+368|24oct01 vbc 9 1398 1351600 1351622 1351813 1351882 1351999 1352187 1352338 1352413 1352521 1352569 1352689 1352735 1352836 1352925 1353037 1353354 1353558 1354093 pf12 327 pf12_1:1355306c|pfL1590c pf12_1:1355306c pfL1590c chr12_1.glm_369|24oct01 glm 1 2412 1355306 1357717 pf12 328 pf12_1:1359158w|pfL1595w pf12_1:1359158w pfL1595w chr12_1.glm_370|24oct01 vbc 1 408 1359158 1359565 pf12 329 pf12_1:1360620c|pfL1600c pf12_1:1360620c pfL1600c chr12_1.glm_371+372+373+374|24oct01 vbc 2 9716 frameshift near 1364327 1364328c [AA] 1360620 1363564 1363855 1370625 pf12 330 pf12_1:1375334w|pfL1605w pf12_1:1375334w pfL1605w chr12_1.glm_375|24oct01 glm 1 4242 1375334 1379575 pf12 331 pf12_1:1380082c|pfL1610c pf12_1:1380082c pfL1610c chr12_1.glm_377|24oct01 vbc 4 1863 1380082 1380256 1380396 1380457 1380553 1380908 1381097 1382366 pf12 332 pf12_1:1385356c|pfL1615c|03oct02 pf12_1:1385356c pfL1615c|03oct02 stanford pf12_1:1385356c pfL1615c|03oct02 stanford 1 141 1385356 1385496 pf12 333 pf12_1:1385694w|pfL1620w pf12_1:1385694w pfL1620w chr12_1.glm_378|24oct01 vbc 3 16320 1385694 1401818 1401920 1402076 1402168 1402205 pf12 334 pf12_1:1403126w|pfL1625w pf12_1:1403126w pfL1625w chr12_1.glm_379|24oct01 glm 1 1746 1403126 1404871 pf12 335 pf12_1:1405169c|pfL1630c pf12_1:1405169c pfL1630c chr12_1.glm_380+381|24oct01 vbc 3 621 1405169 1405660 1405755 1405807 1405880 1405955 pf12 336 pf12_1:1407661w|pfL1635w pf12_1:1407661w pfL1635w chr12_1.glm_382|03oct02 stanford/vbc pf12_1:1407661w pfL1635w chr12_1.glm_382|03oct02 stanford/vbc 3 3081 1407661 1410576 1410738 1410866 1410982 1411017 pf12 337 pf12_1:1411594c|pfL1640c pf12_1:1411594c pfL1640c chr12_1.glm_383|24oct01 glm 2 1266 1411594 1411743 1411976 1413091 pf12 338 pf12_1:1414401w|pfL1645w pf12_1:1414401w pfL1645w chr12_1.glm_384|24oct01 glm 1 11691 1414401 1426091 pf12 339 pf12_1:1427385w|pfL1650w pf12_1:1427385w pfL1650w chr12_1.glm_385|24oct01 vbc 1 6203 frameshifts near 1430361 and 1431435 1430361w [A] | 1431433 [A] 1427385 1433587 pf12 340 pf12_1:1433807c|pfL1655c pf12_1:1433807c pfL1655c chr12_1.glm_386|24oct01 glm 2 1875 1433807 1434713 1435015 1435982 pf12 341 pf12_1:1436777c|pfL1660c pf12_1:1436777c pfL1660c chr12_1.glm_387|24oct01 vbc 6 1971 1436777 1436884 1436992 1437089 1437241 1437347 1437441 1437488 1437564 1437738 1437902 1439336 pf12 342 pf12_1:1439883c|pfL1665c pf12_1:1439883c pfL1665c chr12_1.glm_388|24oct01 glm 1 1155 1439883 1441037 pf12 343 pf12_1:1441723c|pfL1670c pf12_1:1441723c pfL1670c chr12_1.glm_389|24oct01 glm 1 3393 1441723 1445115 pf12 344 pf12_1:1446362c|pfL1675c pf12_1:1446362c pfL1675c chr12_1.glm_390+391|24oct01 vbc 2 3771 1446362 1449900 1450091 1450322 pf12 345 pf12_1:1452593w|pfL1680w pf12_1:1452593w pfL1680w chr12_1.glm_393|24oct01 vbc 5 3990 1452593 1456102 1456232 1456324 1456420 1456566 1456687 1456788 1457077 1457214 pf12 346 pf12_1:1458338w|pfL1685w pf12_1:1458338w pfL1685w chr12_1.glm_394|03oct02 stanford/vbc pf12_1:1458338w pfL1685w chr12_1.glm_394|03oct02 stanford/vbc 3 510 1458338 1458349 1458478 1458897 1459092 1459169 pf12 347 pf12_1:1459820w|pfL1690w pf12_1:1459820w pfL1690w chr12_1.glm_395|24oct01 vbc 3 1356 1459820 1460285 1460405 1461047 1461226 1461472 pf12 348 pf12_1:1462195c|pfL1695c pf12_1:1462195c pfL1695c chr12_1.glm_395.1|24oct01 vbc 2 216 1462195 1462298 1462477 1462588 pf12 349 pf12_1:1464205c|pfL1700c pf12_1:1464205c pfL1700c chr12_1.glm_396|24oct01 vbc 2 3174 1464205 1464255 1464436 1467558 pf12 350 pf12_1:1470699w|pfL1705w pf12_1:1470699w pfL1705w chr12_1.glm_397|24oct01 glm 1 4989 1470699 1475687 pf12 351 pf12_1:1476309c|pfL1710c pf12_1:1476309c pfL1710c chr12_1.glm_398|24oct01 vbc 2 3537 1476309 1476376 1476532 1480000 pf12 352 pf12_1:1480988w|pfL1715w pf12_1:1480988w pfL1715w chr12_1.glm_399|24oct01 vbc 1 1941 1480988 1482928 pf12 353 pf12_1:1484293w|pfL1720w pf12_1:1484293w pfL1720w chr12_1.glm_400|24oct01 vbc 3 1329 1484293 1484295 1484414 1484515 1484675 1485898 pf12 354 pf12_1:1487071w|pfL1725w pf12_1:1487071w pfL1725w chr12_1.glm_401|24oct01 vbc 1 1608 1487071 1488678 pf12 355 pf12_1:1489306c|pfL1730c pf12_1:1489306c pfL1730c chr12_1.glm_402+403+404|03oct02 stanford/vbc pf12_1:1489306c pfL1730c chr12_1.glm_402+403+404|03oct02 stanford/vbc 14 6045 1489306 1489467 1489558 1489639 1489786 1489939 1490021 1490762 1490933 1493357 1493538 1493784 1493955 1494327 1494465 1494599 1494733 1494822 1494931 1495073 1495228 1495378 1495497 1495601 1495685 1495939 1496072 1497052 pf12 356 pf12_1:1497674c|pfL1735c pf12_1:1497674c pfL1735c chr12_1.glm_405|24oct01 vbc 6 3165 1497674 1497821 1497925 1497993 1498113 1498201 1498319 1498444 1498563 1498637 1498741 1501398 pf12 357 pf12_1:1502823w|pfL1740w pf12_1:1502823w pfL1740w chr12_1.glm_406|24oct01 vbc 1 1233 1502823 1504055 pf12 358 pf12_1:1506919c|pfL1745c pf12_1:1506919c pfL1745c chr12_1.glm_407|24oct01 vbc 1 1338 1506919 1508256 pf12 359 pf12_1:1512188c|pfL1750c pf12_1:1512188c pfL1750c chr12_1.glm_409|24oct01 glm 1 4317 1512188 1516504 pf12 360 pf12_1:1520315w|pfL1755w pf12_1:1520315w pfL1755w chr12_1.glm_411.1|24oct01 vbc 1 1278 1520315 1521592 pf12 361 pf12_1:1522509w|pfL1760w pf12_1:1522509w pfL1760w chr12_1.glm_411.2|24oct01 vbc/stanford /stanford 3 1782 1522509 1522548 1522788 1524186 1524278 1524620 pf12 362 pf12_1:1525395c|pfL1765c pf12_1:1525395c pfL1765c chr12_1.glm_412|24oct01 glm 1 810 1525395 1526204 pf12 363 pf12_1:1527443c|pfL1770c pf12_1:1527443c pfL1770c chr12_1.glm_413|24oct01 glm 2 459 1527443 1527819 1527941 1528022 pf12 364 pf12_1:1529809c|pfL1775c pf12_1:1529809c pfL1775c chr12_1.glm_414|24oct01 glm 1 1527 1529809 1531335 pf12 365 pf12_1:1532236w|pfL1780w pf12_1:1532236w pfL1780w chr12_1.glm_415|24oct01 glm 3 1530 1532236 1533583 1533768 1533924 1534041 1534065 pf12 366 pf12_1:1534507c|pfL1785c pf12_1:1534507c pfL1785c chr12_1.glm_416|24oct01 vbc 3 1119 1534507 1534713 1534852 1534931 1535036 1535867 pf12 367 pf12_1:1538126w|pfL1790w pf12_1:1538126w pfL1790w chr12_1.glm_418|24oct01 glm 2 2061 1538126 1540029 1540240 1540396 pf12 368 pf12_1:1540754c|pfL1795c pf12_1:1540754c pfL1795c chr12_1.glm_419|24oct01 glm 1 8379 1540754 1549132 pf12 369 pf12_1:1550312w|pfL1800w pf12_1:1550312w pfL1800w chr12_1.glm_420|24oct01 glm 1 5748 1550312 1556059 pf12 370 pf12_1:1556287c|pfL1805c pf12_1:1556287c pfL1805c chr12_1.glm_421|24oct01 vbc 3 924 1556287 1556377 1556530 1556765 1557009 1557605 pf12 371 pf12_1:1558897w|pfL1810w pf12_1:1558897w pfL1810w chr12_1.glm_422|24oct01 vbc 3 1317 1558897 1558927 1559149 1559534 1559712 1560611 pf12 372 pf12_1:1561522c|pfL1815c pf12_1:1561522c pfL1815c chr12_1.glm_423|24oct01 vbc 1 5046 1561522 1566567 pf12 373 pf12_1:1568594w|pfL1820w pf12_1:1568594w pfL1820w chr12_1.glm_424+425+426|24oct01 vbc 3 1508 frameshifts @ 1568822 & 1569004 1568822w [Ag] | 1569005 [G] 1568594 1568822 1569004 1570162 1570438 1570557 pf12 374 pf12_1:1572359w|pfL1825w pf12_1:1572359w pfL1825w chr12_1.glm_427|24oct01 glm 2 633 1572359 1572404 1572959 1573545 pf12 375 pf12_1:1575185w|pfL1830w|03oct02 pf12_1:1575185w pfL1830w|03oct02 stanford pf12_1:1575185w pfL1830w|03oct02 stanford 2 222 1575185 1575290 1575391 1575506 pf12 376 pf12_1:1577169w|pfL1835w pf12_1:1577169w pfL1835w chr12_1.glm_429|24oct01 glm 1 3567 1577169 1580735 pf12 377 pf12_1:1581972w|pfL1840w pf12_1:1581972w pfL1840w chr12_1.glm_430|24oct01 vbc 2 456 1581972 1582032 1582334 1582728 pf12 378 pf12_1:1583897c|pfL1845c pf12_1:1583897c pfL1845c chr12_1.glm_431|24oct01 glm 1 687 1583897 1584583 pf12 379 pf12_1:1586249c|pfL1850c pf12_1:1586249c pfL1850c chr12_1.glm_432|24oct01 glm 2 1050 1586249 1587198 1587355 1587454 pf12 380 pf12_1:1589157w|pfL1855w pf12_1:1589157w pfL1855w chr12_1.glm_433|24oct01 glm 1 2904 1589157 1592060 pf12 381 pf12_1:1592547c|pfL1860c pf12_1:1592547c pfL1860c chr12_1.glm_434|24oct01 vbc 4 657 1592547 1592674 1592794 1592964 1593163 1593306 1593407 1593620 pf12 382 pf12_1:1594814w|pfL1865w pf12_1:1594814w pfL1865w chr12_1.glm_435|24oct01 vbc 3 5439 1594814 1600072 1600197 1600267 1600406 1600514 pf12 383 pf12_1:1601503c|pfL1870c pf12_1:1601503c pfL1870c chr12_1.glm_436|24oct01 glm 1 1182 1601503 1602684 pf12 384 pf12_1:1605095w|pfL1875w pf12_1:1605095w pfL1875w chr12_1.glm_437|24oct01 glm 5 1518 1605095 1605113 1605336 1605434 1605838 1605876 1606058 1607152 1607262 1607527 pf12 385 pf12_1:1610357w|pfL1880w pf12_1:1610357w pfL1880w chr12_1.glm_438|24oct01 vbc 1 2373 may initiate at 1610351 1610357 1612729 pf12 386 pf12_1:1615311c|pfL1885c pf12_1:1615311c pfL1885c chr12_1.glm_439|24oct01 glm 1 1530 1615311 1616840 pf12 387 pf12_1:1620876c|pfL1890c pf12_1:1620876c pfL1890c chr12_1.glm_441|24oct01 glm 2 2562 1620876 1620973 1621230 1623693 pf12 388 pf12_1:1626761w|pfL1895w pf12_1:1626761w pfL1895w chr12_1.glm_442|24oct01 glm 2 810 1626761 1627399 1627746 1627916 pf12 389 pf12_1:1634680w|pfL1900w pf12_1:1634680w pfL1900w chr12_1.glm_443|24oct01 vbc 1 7737 1634680 1642416 pf12 390 pf12_1:1645207w|pfL1905w pf12_1:1645207w pfL1905w chr12_1.glm_444|24oct01 glm 1 618 1645207 1645824 pf12 391 pf12_1:1646600c|pfL1910c pf12_1:1646600c pfL1910c chr12_1.glm_445|24oct01 glm 1 540 1646600 1647139 pf12 392 pf12_1:1648655w|pfL1915w pf12_1:1648655w pfL1915w chr12_1.glm_446|24oct01 glm 1 3021 1648655 1651675 pf12 393 pf12_1:1652924c|pfL1920c pf12_1:1652924c pfL1920c chr12_1.glm_447|24oct01 glm 1 909 1652924 1653832 pf12 394 pf12_1:1655475w|pfL1925w pf12_1:1655475w pfL1925w chr12_1.glm_448|24oct01 glm 1 2643 1655475 1658117 pf12 395 pf12_1:1660439w|pfL1930w pf12_1:1660439w pfL1930w chr12_1.glm_449|24oct01 glm 1 17304 1660439 1677742 pf12 396 pf12_1:1678426c|pfL1935c pf12_1:1678426c pfL1935c chr12_1.glm_450|24oct01 glm 1 3099 1678426 1681524 pf12 397 pf12_1:1682823w|pfL1940w pf12_1:1682823w pfL1940w chr12_1.glm_451|24oct01 glm 1 1626 1682823 1684448 pf12 398 pf12_1:1685082c|pfL1945c pf12_1:1685082c pfL1945c chr12_1.glm_452|24oct01 glm qimr:ts etramp etramp 1 318 1685082 1685399 pf12 399 pf12_1:1688296c|bis pf12_1:1688296c bis pfL1945c chr12_1.glm_453+454|24oct01 vbc pfemp1 var pseudogene pfemp1 var pseudogene 2 2523 1690322c [A] | 1689913 [GA] | 1688865 [GA] | 1688497 [T] 1688296 1689516 1689834 1691135 pf12 400 pf12_1:1694138w|pfL1950w pf12_1:1694138w pfL1950w chr12_1.glm_457|24oct01 vbc pfemp1 var pfemp1 var 2 7941 1694138 1700695 1701693 1703075 pf12 401 pf12_1:1704500w|pfL1955w pf12_1:1704500w pfL1955w chr12_1.glm_458+459|24oct01 vbc pfemp1 var pfemp1 var 2 6864 1704500 1709932 1711048 1712478 pf12 402 pf12_1:1715828w|ante pf12_1:1715828w ante pfL1960w vbc nc-rna pfemp1 promoter nc-rna pfemp1 promoter 1 194 1715828 1716021 pf12 403 pf12_1:1719562w|pfL1960w pf12_1:1719562w pfL1960w chr12_1.glm_461|24oct01 glm pfemp1 var pfemp1 var 2 7080 1719562 1725300 1726104 1727444 pf12 404 pf12_1:1728616w|pfL1965w pf12_1:1728616w pfL1965w chr12_1.glm_462|24oct01 vbc rifin-like pseudogene rifin-like pseudogene 2 1016 1729534w [GT] | 1729752 [T] | 1729828 [GT] 1728616 1728687 1729003 1729946 pf12 405 pf12_1:1731802w|ante pf12_1:1731802w ante pfL1970w vbc nc-rna pfemp1 promoter nc-rna pfemp1 promoter 1 194 1731802 1731995 pf12 406 pf12_1:1735531w|pfL1970w pf12_1:1735531w pfL1970w chr12_1.glm_464+465+466|24oct01 vbc pfemp1 var pfemp1 var 2 6863 frameshift near 1739765 1739764w [GtA] 1735531 1740989 1741992 1743395 pf12 407 pf12_1:1745271w|bis pf12_1:1745271w bis pfL1970w vbc nc-rna pfemp1 promoter nc-rna pfemp1 promoter 1 191 ? assembly @ 1745462 1745271 1745461 pf12 408 pf12_1:1746431c|pfL1975c pf12_1:1746431c pfL1975c chr12_1.glm_467|24oct01 glm 2 1407 1746431 1747752 1747896 1747980 pf12 409 pf12_1:1748860c|pfL1980c pf12_1:1748860c pfL1980c chr12_1.glm_468|24oct01 glm 3 6930 1748860 1755631 1755853 1755955 1756170 1756224 pf12 410 pf12_1:1757504c|pfL1985c pf12_1:1757504c pfL1985c chr12_1.glm_469|24oct01 vbc 2 1623 1757504 1759115 1759451 1759461 pf12 411 pf12_1:1760403c|pfL1990c pf12_1:1760403c pfL1990c chr12_1.glm_470|24oct01 glm 1 5976 1760403 1766378 pf12 412 pf12_1:1771983c|pfL1995c pf12_1:1771983c pfL1995c chr12_1.glm_472|24oct01 glm 1 1263 1771983 1773245 pf12 413 pf12_1:1774888w|pf12_1:1774888w pf12_1:1774888w pfL2000w chr12_1.glm_473+474|24oct01 vbc 7 771 1774888 1774900 1775042 1775254 1775461 1775539 1775736 1775935 1776045 1776107 1776207 1776268 1776429 1776569 pf12 414 pf12_1:1778141w|pfL2005w pf12_1:1778141w pfL2005w chr12_1.glm_475|24oct01 glm 2 1011 1778141 1778305 1778553 1779398 pf12 415 pf12_1:1779999c|pfL2010c pf12_1:1779999c pfL2010c chr12_1.glm_476|24oct01 glm 1 2649 1779999 1782647 pf12 416 pf12_1:1784367w|pfL2015w pf12_1:1784367w pfL2015w chr12_1.glm_477|24oct01 glm 1 2031 1784367 1786397 pf12 417 pf12_1:1787223c|pfL2020c pf12_1:1787223c pfL2020c chr12_1.glm_478.1|24oct01 vbc 1 1596 1787223 1788818 pf12 418 pf12_1:1790544w|pfL2025w+pfL2030w pf12_1:1790544w pfL2025w+pfL2030w chr12_1.glm_479|24oct01 glm 2 2109 1790544 1790717 1791128 1793062 pf12 419 pf12_1:1793519c|pfL2035c pf12_1:1793519c pfL2035c chr12_1.glm_480|24oct01 vbc 7 561 1793519 1793637 1793737 1793785 1793894 1793987 1794116 1794177 1794282 1794307 1794503 1794558 1794668 1794822 pf12 420 pf12_1:1795832w|pfL2040w pf12_1:1795832w pfL2040w chr12_1.glm_481+482|24oct01 vbc 4 1353 1795832 1795996 1796142 1796480 1796855 1797216 1797361 1797847 pf12 421 pf12_1:1798630w|pfL2045w pf12_1:1798630w pfL2045w chr12_1.glm_483|24oct01 glm 1 1146 1798630 1799775 pf12 422 pf12_1:1800549w|pfL2050w pf12_1:1800549w pfL2050w chr12_1.glm_484|24oct01 vbc 1 1494 1800549 1802042 pf12 423 pf12_1:1803902w|pfL2055w pf12_1:1803902w pfL2055w chr12_1.glm_485|24oct01 vbc 2 414 1803902 1803904 1804060 1804470 pf12 424 pf12_1:1805367c|pfL2060c pf12_1:1805367c pfL2060c chr12_1.glm_486|24oct01 vbc 4 1380 1805367 1806574 1806721 1806813 1807000 1807060 1807326 1807343 pf12 425 pf12_1:1808865c|pfL2065c|03oct02 pf12_1:1808865c pfL2065c|03oct02 vbc 3 288 1808865 1808922 1809270 1809442 1809553 1809609 pf12 426 pf12_1:1811777w|pfL2070w pf12_1:1811777w pfL2070w chr12_1.glm_487|03oct02 stanford pf12_1:1811777w pfL2070w chr12_1.glm_487|03oct02 stanford 1 909 1811777 1812685 pf12 427 pf12_1:1813494c|pfL2075c pf12_1:1813494c pfL2075c chr12_1.glm_488|24oct01 glm 1 729 1813494 1814222 pf12 428 pf12_1:1816056c|pfL2080c pf12_1:1816056c pfL2080c chr12_1.glm_490|24oct01 vbc 2 240 1816056 1816121 1816262 1816435 pf12 429 pf12_1:1818725w|pfL2085w pf12_1:1818725w pfL2085w chr12_1.glm_491|24oct01 glm 1 1332 1818725 1820056 pf12 430 pf12_1:1820868c|pfL2090c pf12_1:1820868c pfL2090c chr12_1.glm_492|24oct01 vbc 8 681 1820868 1820912 1821021 1821073 1821174 1821209 1821295 1821352 1821498 1821606 1821851 1822077 1822301 1822387 1822517 1822582 pf12 431 pf12_1:1825946w|pfL2095w|03oct02 pf12_1:1825946w pfL2095w|03oct02 stanford pf12_1:1825946w pfL2095w|03oct02 stanford 3 348 1825946 1826045 1826400 1826500 1826725 1826871 pf12 432 pf12_1:1829648w|pfL2100w pf12_1:1829648w pfL2100w chr12_1.glm_493|24oct01 vbc 1 1398 1829648 1831045 pf12 433 pf12_1:1831472c|pfL2105c pf12_1:1831472c pfL2105c chr12_1.glm_494|03oct02 stanford pf12_1:1831472c pfL2105c chr12_1.glm_494|03oct02 stanford 4 1113 1831472 1831509 1831628 1831678 1831812 1831883 1831986 1832937 pf12 434 pf12_1:1834052c|pfL2110c pf12_1:1834052c pfL2110c chr12_1.glm_495+496+497|24oct01 vbc 6 5541 1834052 1834323 1834581 1834649 1834875 1836636 1836988 1839147 1839270 1840163 1840341 1840724 pf12 435 pf12_1:1842387c|pfL2115c pf12_1:1842387c pfL2115c chr12_1.glm_499|24oct01 glm 3 2919 1842387 1842549 1842685 1845249 1845449 1845639 pf12 436 pf12_1:1847665w|pfL2120w pf12_1:1847665w pfL2120w chr12_1.glm_500|24oct01 vbc 5 3924 1847665 1851043 1851150 1851260 1851441 1851659 1851781 1851950 1852100 1852144 pf12 437 pf12_1:1852832c|pfL2125c pf12_1:1852832c pfL2125c chr12_1.glm_501|24oct01 glm 1 2838 1852832 1855669 pf12 438 pf12_1:1859644w|pfL2130w pf12_1:1859644w pfL2130w chr12_1.glm_501.1=gem_208=phat368|03oct02 stanford pf12_1:1859644w pfL2130w chr12_1.glm_501.1=gem_208=phat368|03oct02 stanford 2 4008 1859644 1863603 1863787 1863834 pf12 439 pf12_1:1864217c|pfL2135c pf12_1:1864217c pfL2135c chr12_1.glm_501.2=phat_369|24oct01 phat 1 2433 1864217 1866649 pf12 440 pf12_1:1868521c|pfL2140c pf12_1:1868521c pfL2140c chr12_1.glm_502|24oct01 glm 1 999 1868521 1869519 pf12 441 pf12_1:1871907w|pfL2145w pf12_1:1871907w pfL2145w chr12_1.glm_503|24oct01 vbc 3 669 1871907 1871974 1872172 1872724 1872852 1872899 pf12 442 pf12_1:1873182c|pfL2150c pf12_1:1873182c pfL2150c chr12_1.glm_504|24oct01 vbc 9 1008 1873182 1873205 1873354 1873406 1873520 1873653 1873789 1873961 1874076 1874152 1874278 1874347 1874493 1874734 1874921 1875045 1875166 1875275 pf12 443 pf12_1:1877027w|pfL2155w pf12_1:1877027w pfL2155w chr12_1.glm_505|03oct02 stanford/vbc pf12_1:1877027w pfL2155w chr12_1.glm_505|03oct02 stanford/vbc 6 2355 1877027 1879026 1879190 1879248 1879367 1879503 1879622 1879655 1879772 1879829 1879963 1880029 pf12 444 pf12_1:1880024c|pfL2160c pf12_1:1880024c pfL2160c chr12_1.glm_506|24oct01 glm 1 1371 1880024 1881394 pf12 445 pf12_1:1883457w|pfL2165w pf12_1:1883457w pfL2165w chr12_1.glm_506.1=phat_375|24oct01 vbc 2 3981 1883457 1883507 1883740 1887669 pf12 446 pf12_1:1888238c|pfL2170c pf12_1:1888238c pfL2170c chr12_1.glm_507|24oct01 glm 1 4449 1888238 1892686 pf12 447 pf12_1:1893057w|pfL2175w pf12_1:1893057w pfL2175w chr12_1.glm_508|24oct01 vbc 4 474 1893057 1893108 1893212 1893396 1893511 1893627 1893772 1893891 pf12 448 pf12_1:1894930w|pfL2180w pf12_1:1894930w pfL2180w chr12_1.glm_509|24oct01 glm 1 1026 1894930 1895955 pf12 449 pf12_1:1897321w|pfL2185w pf12_1:1897321w pfL2185w chr12_1.glm_511|24oct01 vbc 10 1335 1897321 1897365 1897509 1897583 1897683 1897781 1897878 1897926 1898064 1898122 1898214 1898253 1898415 1898491 1898620 1898673 1898793 1898861 1899059 1899826 pf12 450 pf12_1:1900238c|pfL2190c pf12_1:1900238c pfL2190c chr12_1.glm_512|24oct01 glm 1 4818 1900238 1905055 pf12 451 pf12_1:1908137w|pfL2195w pf12_1:1908137w pfL2195w chr12_1.glm_513+514|24oct01 vbc 3 1296 1908137 1908195 1908393 1908582 1908706 1909752 pf12 452 pf12_1:1910951w|pfL2200w pf12_1:1910951w pfL2200w chr12_1.glm_515|24oct01 glm 1 936 1910951 1911886 pf12 453 pf12_1:1912445w|pfL2205w pf12_1:1912445w pfL2205w chr12_1.glm_516+517|24oct01 vbc 1 1439 frameshift in poly-a region 1913390..1913518 similar to pfb0279w+pfb0280w 1913405w [AA] 1912445 1913883 pf12 454 pf12_1:1915735w|pfL2210w pf12_1:1915735w pfL2210w chr12_1.glm_518|24oct01 glm 2 1893 1915735 1917479 1917637 1917784 pf12 455 pf12_1:1920770w|pfL2215w pf12_1:1920770w pfL2215w chr12_1.glm_521|24oct01 glm 1 1131 1920770 1921900 pf12 456 pf12_1:1925628w|pfL2220w pf12_1:1925628w pfL2220w chr12_1.glm_522+523+524|24oct01 vbc 10 2667 1925628 1925849 1926024 1926354 1926491 1926584 1926693 1926771 1926901 1927483 1927624 1928327 1928426 1928605 1928757 1928818 1928914 1929112 1929212 1929424 pf12 457 pf12_1:1931956w|pfL2225w pf12_1:1931956w pfL2225w chr12_1.glm_525|24oct01 glm 1 615 1931956 1932570 pf12 458 pf12_1:1933747c|pfL2230c pf12_1:1933747c pfL2230c chr12_1.glm_526|24oct01 glm 1 1707 1933747 1935453 pf12 459 pf12_1:1936508w|pfL2235w pf12_1:1936508w pfL2235w chr12_1.glm_527|24oct01 glm 1 1173 1936508 1937680 pf12 460 pf12_1:1938629w|pfL2240w pf12_1:1938629w pfL2240w chr12_1.glm_528|24oct01 glm 1 1323 1938629 1939951 pf12 461 pf12_1:1941351w|pfL2245w pf12_1:1941351w pfL2245w chr12_1.glm_529+530|24oct01 vbc 4 786 1941351 1941814 1941916 1942047 1942191 1942308 1942406 1942477 pf12 462 pf12_1:1943344c|pfL2250c pf12_1:1943344c pfL2250c chr12_1.glm_531+532|24oct01 vbc 2 2208 1943344 1944595 1944834 1945789 pf12 463 pf12_1:1946900w|pfL2255w pf12_1:1946900w pfL2255w chr12_1.glm_533+534|24oct01 vbc 6 1092 1946900 1947102 1947208 1947330 1947433 1947558 1947671 1947738 1947969 1948473 1948653 1948719 pf12 464 pf12_1:1949580w|pfL2260w pf12_1:1949580w pfL2260w chr12_1.glm_535|24oct01 glm 2 744 1949580 1950014 1950171 1950479 pf12 465 pf12_1:1950975c|pfL2265c pf12_1:1950975c pfL2265c chr12_1.glm_536|24oct01 glm 1 525 1950975 1951499 pf12 466 pf12_1:1952554w|pfL2270w pf12_1:1952554w pfL2270w chr12_1.glm_537|24oct01 glm 1 1512 1952554 1954065 pf12 467 pf12_1:1955110c|pfL2275c pf12_1:1955110c pfL2275c chr12_1.glm_538|24oct01 glm 1 915 1955110 1956024 pf12 468 pf12_1:1959598w|pfL2280w pf12_1:1959598w pfL2280w chr12_1.glm_539|24oct01 glm 1 2730 1959598 1962327 pf12 469 pf12_1:1962760c|pfL2285c pf12_1:1962760c pfL2285c chr12_1.glm_540+541|24oct01 vbc 3 2718 splice @ 1964852 truncates expression 1962760 1964272 1964627 1964683 1964906 1966053 pf12 470 pf12_1:1968493w|pfL2290w pf12_1:1968493w pfL2290w chr12_1.glm_545|24oct01 vbc 3 324 1968493 1968559 1968700 1968868 1969060 1969147 pf12 471 pf12_1:1969525w|bis pf12_1:1969525w bis pfL2290w chr12_1.glm_547|24oct01 vbc 3 1284 1969525 1969709 1969828 1969952 1970087 1971060 pf12 472 pf12_1:1972424w|pfL2295w pf12_1:1972424w pfL2295w chr12_1.glm_548|24oct01 glm 1 639 1972424 1973062 pf12 473 pf12_1:1973561w|pfL2300w pf12_1:1973561w pfL2300w chr12_1.glm_549|24oct01 vbc 1 672 1973561 1974232 pf12 474 pf12_1:1975158w|pfL2305w pf12_1:1975158w pfL2305w chr12_1.glm_550|24oct01 glm 1 1266 1975158 1976423 pf12 475 pf12_1:1977851w|pfL2310w pf12_1:1977851w pfL2310w chr12_1.glm_551|24oct01 glm 1 1074 1977851 1978924 pf12 476 pf12_1:1979772c|pfL1215c pf12_1:1979772c pfL1215c chr12_1.glm_551.1|24oct01 vbc 1 414 1979772 1980185 pf12 477 pf12_1:1981892w|pfL2320w pf12_1:1981892w pfL2320w chr12_1.glm_552|24oct01 vbc 1 858 1981892 1982749 pf12 478 pf12_1:1983466c|pfL2325c pf12_1:1983466c pfL2325c chr12_1.glm_553|2001.10.24 glm 1 870 1983466 1984335 pf12 479 pf12_1:1988223w|pfL2330w pf12_1:1988223w pfL2330w chr12_1.glm_554|24oct01 glm 3 2241 1988223 1990301 1990399 1990514 1990686 1990731 pf12 480 pf12_1:1994761w|pfL2335w pf12_1:1994761w pfL2335w chr12_1.glm_555|24oct01 glm 1 5970 1994761 2000730 pf12 481 pf12_1:2001973w|pfL2340w pf12_1:2001973w pfL2340w chr12_1.glm_555.1=gen235=phat403|24oct01 phat 1 285 2001973 2002257 pf12 482 pf12_1:2002709c|pfL2345c pf12_1:2002709c pfL2345c chr12_1.glm_556|2001.10.24 vbc 1 1308 2002709 2004016 pf12 483 pf12_1:2005161c|pfL2350c pf12_1:2005161c pfL2350c chr12_1.glm_557|2001.10.24 glm 1 2019 2005161 2007179 pf12 484 pf12_1:2008180w|pfL2355w pf12_1:2008180w pfL2355w chr12_1.glm_558|24oct01 vbc 3 1179 2008180 2008245 2008468 2009499 2009614 2009694 pf12 485 pf12_1:2010414w|pfL2360w pf12_1:2010414w pfL2360w chr12_1.glm_559|03oct02 stanford pf12_1:2010414w pfL2360w chr12_1.glm_559|03oct02 stanford 1 462 2010414 2010875 pf12 486 pf12_1:2010962w|bis pf12_1:2010962w bis pfL2360w|03oct02 vbc 1 126 2010962 2011087 pf12 487 pf12_1:2012662w|pfL2365w pf12_1:2012662w pfL2365w chr12_1.glm_560|24oct01 vbc 2 3156 2012662 2015703 2015944 2016057 pf12 488 pf12_1:2016311c|pfL2370c pf12_1:2016311c pfL2370c chr12_1.glm_561|24oct01 glm 1 432 2016311 2016742 pf12 489 pf12_1:2017350c|pfL2375c pf12_1:2017350c pfL2375c pfL2375c|03oct02 vbc 5 498 2017350 2017391 2017611 2017643 2017803 2017901 2018005 2018097 2018243 2018473 pf12 490 pf12_1:2018994c|pfL2380c pf12_1:2018994c pfL2380c chr12_1.glm_562|24oct01 vbc 3 2598 changed sequence from 24oct01 2018994 2019015 2019256 2021543 2021706 2021993 pf12 491 pf12_1:2023441c|pfL2385c pf12_1:2023441c pfL2385c chr12_1.glm_563+564|24oct01 vbc 1 2735 frameshift @ 2025808 2025809c [GAa] 2023441 2026175 pf12 492 pf12_1:2029989c|pfL2390c pf12_1:2029989c pfL2390c chr12_1.glm_565+566|24oct01 vbc 5 8799 2029989 2030340 2030944 2031046 2031220 2031336 2031437 2031513 2031688 2039837 pf12 493 pf12_1:2041278c|pfL2395c pf12_1:2041278c pfL2395c chr12_1.glm_567|24oct01 glm 1 1920 2041278 2043197 pf12 494 pf12_1:2044105w|pfL2400w pf12_1:2044105w pfL2400w chr12_1.glm_568|24oct01 glm 1 507 2044105 2044611 pf12 495 pf12_1:2045055c|pfL2405c pf12_1:2045055c pfL2405c chr12_1.glm_569|24oct01 glm 1 9360 2045055 2054414 pf12 496 pf12_1:2059092w|pfL2410w pf12_1:2059092w pfL2410w chr12_1.glm_571|24oct01 glm 6 3120 2059092 2061321 2061725 2061924 2062022 2062169 2062348 2062459 2062688 2062856 2062951 2063211 pf12 497 pf12_1:2064971w|pfL2415w pf12_1:2064971w pfL2415w chr12_1.glm_572|24oct01 vbc 2 894 2064971 2064973 2065134 2066024 pf12 498 pf12_1:2067384w|pfL2420w pf12_1:2067384w pfL2420w chr12_1.glm_573|24oct01 glm 1 1971 2067384 2069354 pf12 499 pf12_1:2071586c|pfL2430c pf12_1:2071586c pfL2430c chr12_1.glm_574|24oct01 vbc 1 2040 2071586 2073625 pf12 500 pf12_1:2075776w|pfL2435w pf12_1:2075776w pfL2435w chr12_1.glm_576|24oct01 vbc 2 534 2075776 2075913 2076106 2076501 pf12 501 pf12_1:2077702w|pfL2440w pf12_1:2077702w pfL2440w chr12_1.glm_577|24oct01 glm 2 4944 2077702 2077888 2078115 2082871 pf12 502 pf12_1:2083337c|pfL2445c pf12_1:2083337c pfL2445c chr12_1.glm_578|24oct01 vbc 1 966 2083337 2084302 pf12 503 pf12_1:2085354c|pfL2450c pf12_1:2085354c pfL2450c pfL2450c|03oct02 chr12_1.glm_580|24oct01 vbc 8 543 2085354 2085410 2085537 2085606 2085779 2085817 2085962 2086044 2086314 2086355 2086463 2086544 2086644 2086745 2086876 2086943 pf12 504 pf12_1:2089469w|pfL2455w pf12_1:2089469w pfL2455w chr12_1.glm_581|24oct01 vbc 3 405 2089469 2089682 2089857 2089903 2090062 2090205 pf12 505 pf12_1:2092072w|pfL2460w pf12_1:2092072w pfL2460w chr12_1.glm_582+583|24oct01 vbc 3 1809 2092072 2092105 2092248 2092339 2092534 2094216 pf12 506 pf12_1:2095047c|pfL2465c pf12_1:2095047c pfL2465c pfL2465c|30oct02 vbc 7 609 2095047 2095124 2095219 2095328 2095452 2095560 2095719 2095785 2095949 2096057 2096190 2096272 2096441 2096493 pf12 507 pf12_1:2097421c|pfL2470c pf12_1:2097421c pfL2470c chr12_1.glm_584|24oct01 glm 1 1410 2097421 2098830 pf12 508 pf12_1:2099837w|pfL22475w pf12_1:2099837w pfL22475w chr12_1.glm_585|24oct01 glm 1 2118 2099837 2101954 pf12 509 pf12_1:2103102w|pfL2480w pf12_1:2103102w pfL2480w chr12_1.glm_586|24oct01 glm 1 2139 2103102 2105240 pf12 510 pf12_1:2106329c|pfL2485c pf12_1:2106329c pfL2485c chr12_1.glm_587.2|24oct01 vbc 2 1713 2106329 2107843 2108081 2108278 pf12 511 pf12_1:2108945c|pfL2490c pf12_1:2108945c pfL2490c chr12_1.glm_587.1|24oct01 vbc 1 1968 2108945 2110912 pf12 512 pf12_1:2112863w|olim pf12_1:2112863w olim pfL2495w vbc trna-val-gtt vbc trna-val-gtt vbc 1 73 2112863 2112935 pf12 513 pf12_1:2113714c|olim pf12_1:2113714c olim pfL2500c vbc trna-gln-caa trna-gln-caa 1 74 chr2 has gln-cag size predicted by alignment with chr 2 2113714 2113787 pf12 514 pf12_1:2114613c|pfL2505c pf12_1:2114613c pfL2505c chr12_1.glm_588+589|24oct01 vbc 8 6648 2114613 2118812 2119021 2120265 2120472 2120719 2120862 2121263 2121416 2121541 2121678 2121812 2121948 2122115 2122349 2122472 pf12 515 pf12_1:2125420w|pfL2510w pf12_1:2125420w pfL2510w chr12_1.glm_590|24oct01 glm 1 1137 2125420 2126556 pf12 516 pf12_1:2128385c|pfL2515c pf12_1:2128385c pfL2515c chr12_1.glm_592|24oct01 vbc 2 258 2128385 2128423 2128553 2128771 pf12 517 pf12_1:2136037w|pfL2520w pf12_1:2136037w pfL2520w chr12_1.glm_593+594+595|24oct01 vbc 2 8672 frameshifts @ 2137540 & 2138261 2137540w [A] | 2138261 [A] 2136037 2136094 2136245 2144858 pf12 518 pf12_1:2145250c|pfL2525c pf12_1:2145250c pfL2525c chr12_1.glm_596|24oct01 glm 2 1185 2145250 2146242 2146409 2146600 pf12 519 pf12_1:2150538w|pfL2530w pf12_1:2150538w pfL2530w chr12_1.glm_597|24oct01 glm 1 1362 2150538 2151899 pf12 520 pf12_1:2154602w|pfL2535w pf12_1:2154602w pfL2535w chr12_1.glm_598+599|24oct01 vbc 2 1353 2154602 2154793 2154948 2156108 pf12 521 pf12_1:2159557w|pfL2540w pf12_1:2159557w pfL2540w chr12_1.glm_600|24oct01 glm 2 1881 2159557 2159685 2159848 2161599 pf12 522 pf12_1:2162691c|pfL2545c pf12_1:2162691c pfL2545c chr12_1.glm_601|24oct01 vbc 2 342 2162691 2162966 2163064 2163129 pf12 523 pf12_1:2168165w|pfL2550w pf12_1:2168165w pfL2550w chr12_1.glm_602+chrblob3052.glm_1|24oct01 vbc 2 1410 2168165 2168227 2168397 2169743 pf12 524 pf12_1:2171325w|pfL2555w pf12_1:2171325w pfL2555w chr12_1.glm_603|24oct01 vbc 2 867 2171325 2171462 2171604 2172332 pf12 525 pf12_1:2173580c|pfL2560c pf12_1:2173580c pfL2560c chr12_1.glm_604|24oct01 vbc stevor pseudogene stevor pseudogene 2 622 frameshift near 2173802 2173802c [A] 2173580 2174123 2174228 2174305 pf12 526 pf12_1:2175312w|pfL2565w pf12_1:2175312w pfL2565w chr12_1.glm_605|24oct01 vbc 2 620 frameshift near 2175782 2175781w [TA] 2175312 2175395 2175535 2176070 pf12 527 pf12_1:2180402w|pfL2570w pf12_1:2180402w pfL2570w chr12_1.glm_606+chrblob_3872+chr13_2039|24oct01 glm 1 2451 2180402 2182852 pf12 528 pf12_1:2183447c|pfL2575c pf12_1:2183447c pfL2575c chr12_1.glm_607+chrblob_3872|24oct01 vbc stevor stevor 2 633 2183447 2184010 2184083 2184151 pf12 529 pf12_1:2188362w|pfL2580w pf12_1:2188362w pfL2580w chr12_1.glm_608+609=gen_260|24oct01 vbc stevor pseudogene stevor pseudogene 2 949 2188807w [AT] | 2189022 [A] | 2189119 [TT] | 2189331 [A] | 2189359 [T] 2188362 2188430 2188717 2189596 pf12 530 pf12_1:2190466c|pfL2585c pf12_1:2190466c pfL2585c chr12_1.glm_610|24oct01 vbc rifin rifin 2 1107 2190466 2191515 2191691 2191747 pf12 531 pf12_1:2196140w|pfL2590w pf12_1:2196140w pfL2590w chr12_1.glm_611|24oct01 vbc 2 855 2196140 2196271 2196383 2197105 pf12 532 pf12_1:2198909w|pfL2595w+pfL2600w pf12_1:2198909w pfL2595w+pfL2600w chr12_1.glm_612|24oct01 vbc pseudogene pseudogene 2 937 2199529w [AA] | 2199561 [GA] 2198909 2199031 2199133 2199946 pf12 533 pf12_1:2201478w|pfL2605w pf12_1:2201478w pfL2605w chr12_1.glm_613|24oct01 vbc rifin rifin 2 1041 2201478 2201534 2201686 2202669 pf12 534 pf12_1:2204707w|pfL2610w pf12_1:2204707w pfL2610w chr12_1.glm_614|24oct01 vbc stevor stevor 2 888 2204707 2204775 2204879 2205697 pf12 535 pf12_1:2207813w|pfL2615w pf12_1:2207813w pfL2615w chr12_1.glm_615|24oct01 glm rifin rifin 2 1056 2207813 2207866 2208097 2209098 pf12 536 pf12_1:2211526w|pfL2620w pf12_1:2211526w pfL2620w chr12_1.glm_616|24oct01 glm stevor stevor 2 909 2211526 2211594 2211698 2212537 pf12 537 pf12_1:2214654w|pfL2625w pf12_1:2214654w pfL2625w chr12_1.glm_617|24oct01 glm stevor stevor 2 1140 2214654 2214722 2214932 2216002 pf12 538 pf12_1:2218435w|pfL2630w pf12_1:2218435w pfL2630w chr12_1.glm_618|24oct01 vbc rifin rifin 2 921 2218435 2218488 2218650 2219516 pf12 539 pf12_1:2221818w|pfL2635w pf12_1:2221818w pfL2635w chr12_1.glm_619|24oct01 vbc stevor stevor 2 909 2221818 2221886 2221992 2222831 pf12 540 pf12_1:2224980c|pfL2640c pf12_1:2224980c pfL2640c chr12_1.glm_620|24oct01 vbc rifin rifin 2 981 2224980 2225906 2226131 2226184 pf12 541 pf12_1:2228615c|pfL2645c pf12_1:2228615c pfL2645c chr12_1.glm_621|24oct01 glm rifin rifin 2 954 2228615 2229514 2229670 2229723 pf12 542 pf12_1:2232246w|pfL2650w pf12_1:2232246w pfL2650w chr12_1.glm_622|24oct01 vbc rifin pseudogene rifin pseudogene 2 422 " subtelomeric copy chr 1, 2, 3, 4, 7, 9, 10, 11, 12, 13, 14 copy of pf9_1:36430c " 2232579w [AAg] 2232246 2232299 2232519 2232886 pf12 543 pf12_1:2234583w|pfL2655w pf12_1:2234583w pfL2655w chr12_1.glm_623|24oct01 glm stevor stevor 2 1038 2234583 2234654 2234810 2235775 pf12 544 pf12_1:2238193w|pfL2660w pf12_1:2238193w pfL2660w chr12_1.glm_624|24oct01 glm rifin rifin 2 1053 2238193 2238246 2238402 2239400 pf12 545 pf12_1:2241254c|pfL2665c pf12_1:2241254c pfL2665c chr12_1.glm_625|24oct01 vbc pfemp1 var pfemp1 var 2 6807 2241254 2242585 2243471 2248945